Gene VC0395_A1579 details

Gene Information

• Locus tag: VC0395_A1579
• Symbol: sppA
• ID: 5137261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1700161
• End bp: 1702011
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640533036
• Product: protease IV
• Protein accession: YP_001217520
• Protein GI: 147673256
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000000832547
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCAC TATTTCGTTT TGTTGGGCTG ATTTTGAAAG GGATTTGGAA AGCGATCACC 
TTCATCAGGC TGGCACTGAC TAACCTTATT TTCTTACTCA GTATTGGCAT TATTTACTTT 
ATTTATGTCC ACGCTGACGC CCCGCTACCC ACCATGGATA AATCCTCGGC ACTGGTGCTC 
AATCTGTCTG GCCCGATTGT TGAGCAGAGT ACGCACATCA ACCCGATGGA CTCCTTTACG 
GGCTCCGTGT TTGGTGAAGA GCTCCCCCGC GAAAACGTGC TGTTTGATAT TGTTGAAACC 
TTACGCCATG CGAAAAATGA CAACAATGTC ACCGGGCTTG TGTTGGCTTT AGGAGACATG 
CCAGAAACCA ACTTGACTAA GCTGCGTTAT ATCGCCAAAG CGATCAACGA ATTCAAAGCC 
TCTGGTAAGC CTGTGTTTGC GGTTGGGGAT TTTTATAATC AGAGCCAATA TTACTTGGCG 
AGTTATGCGG ACAAAATCTA CCTCGCTCCA GATGGTGCCG TACTGCTAAA AGGTTACAGC 
GCCTACTCCA TGTACTACAA AACTCTGCTT GAGAAATTGG ATGTCACCAC TCACGTCTTT 
CGTGTCGGCA CCTACAAATC GGCAATTGAG CCTTTTGTGC GTGATGATAT GTCTGATGCG 
GCTCGTGAAT CCGCTTCTCG CTGGCTCACT CAGTTGTGGA GCGCGTACGT CGATGATGTC 
GCGGCCAATC GCCAAATTGA GATCAAAACC CTTACTCCAA GCATGGAGCA GTTTGTCGCT 
CAGTTGAAAG AAGTGAATGG TGACTTAGCT GCACTGTCCA AAAAAGTCGG TCTCGTCGAT 
GAACTGGCGA CTCGTCAGCA AGTTCGCCAA ACGTTAGCGG AAACTTTTGG TAGCGATGGA 
AAAGACAGTT ATAACGCCAT CGGTTACTAC GAATACAAAA CCACCATTAA GCCAACGACA 
CTGACCGATG CCAACGATAT TGCCGTTGTC GTCGCGAGCG GTGCGATTAT GGATGGCTCA 
CAGCCACGTG GTACCGTGGG TGGCGATACC GTAGCTGGAT TACTGCGCGA AGCTCGTAAC 
GACAGCAATG TAAAAGCGGT CGTACTGCGT GTCGATAGCC CAGGGGGTAG CGCGTTTGCT 
TCCGAAGTGA TCCGCAATGA AATTGAAGCT CTGAAAGCGG CGGGGAAACC TGTGGTGGTG 
TCGATGTCAA GCCTTGCCGC TTCCGGTGGT TACTGGATTT CGATGAGCGC AGATAAGATT 
GTCGCCCAAC CGACCACACT GACAGGTTCA ATCGGTATTT TCAGCGTGAT CACTACCTTC 
GAGAAAGGAC TGAACAACCT TGGTATTTAT ACTGATGGTG TTGGTACAAC GCCTTTTTCA 
GGACAAGGCC TGACCACGGG CCTCACCCAA GGTGCAAAAG ATGCGATTCA ACTGGGTATT 
GAACACGGTT ATCAGCGCTT TATTTCTTTG GTTGCAGAGA AACGTGGCCT GACCTTAAAA 
GCAGTGGATG AACTGGCTCA GGGCCGAGTC TGGACTGCAC AAGATGCACA AACCCTCGGT 
TTAGTCGATC AGTTGGGTGA TTTTGATGAT GCCGTACATT TGGCAGCGGA TCTGGCACAG 
TTGGATCAAT ATAACCTGTA CTGGGTTGAA GAGCCACTCA CTCCAGCCCA GCAATTTTTA 
CAAGATCTGC TCGGACAAGT ACGTGTCAGC TTAGGTTTGG ATGTCTCCAC TCTCTTGCCA 
AAATCACTGC AACCCTTGGC AGTAGAGTGG CAACAACAAA CGTCGCTGCT CAATCAATTG 
AATGATCCTA AAGGGCAATA TGCGTTCTGT CTGCCCTGCC AAGTAGAATA G 

 

Protein sequence

MKSLFRFVGL ILKGIWKAIT FIRLALTNLI FLLSIGIIYF IYVHADAPLP TMDKSSALVL 
NLSGPIVEQS THINPMDSFT GSVFGEELPR ENVLFDIVET LRHAKNDNNV TGLVLALGDM 
PETNLTKLRY IAKAINEFKA SGKPVFAVGD FYNQSQYYLA SYADKIYLAP DGAVLLKGYS 
AYSMYYKTLL EKLDVTTHVF RVGTYKSAIE PFVRDDMSDA ARESASRWLT QLWSAYVDDV 
AANRQIEIKT LTPSMEQFVA QLKEVNGDLA ALSKKVGLVD ELATRQQVRQ TLAETFGSDG 
KDSYNAIGYY EYKTTIKPTT LTDANDIAVV VASGAIMDGS QPRGTVGGDT VAGLLREARN 
DSNVKAVVLR VDSPGGSAFA SEVIRNEIEA LKAAGKPVVV SMSSLAASGG YWISMSADKI 
VAQPTTLTGS IGIFSVITTF EKGLNNLGIY TDGVGTTPFS GQGLTTGLTQ GAKDAIQLGI 
EHGYQRFISL VAEKRGLTLK AVDELAQGRV WTAQDAQTLG LVDQLGDFDD AVHLAADLAQ 
LDQYNLYWVE EPLTPAQQFL QDLLGQVRVS LGLDVSTLLP KSLQPLAVEW QQQTSLLNQL 
NDPKGQYAFC LPCQVE