Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1561 |
Symbol | menD |
ID | 5137269 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1679112 |
End bp | 1680824 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640533018 |
Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
Protein accession | YP_001217502 |
Protein GI | 147675176 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGCG ATCAAGCTTT ATTGAACCGT CTTTGGTCGC GAGTGTTACT CGAAGAGTTA AGCCGTTTGG GAGTGACACA AGTGTGTGTG GCTCCGGGCT CTCGTTCAAC CCCGTTGACG CTTGAGGCTA ATGCGAATAC GGCTTTCACG TTACATACTC ACTATGACGA GCGCGGCTTA GGGTTTATGG CGCTTGGTTT AGCGAAAGCT AGCCAACAGC CTGTCGCGGT GATTGTAACC TCGGGCACTG CAGTGGCGAA CTTATTACCA GCCATTGCTG AATCCAAACT CACCGGTGAA CGTTTAGTGG TACTCACGGC GGATCGTCCG CTTGAGCTAG TGGGGTGTGG TGCCAATCAA GCCATTGTGC AATCGGGGAT TTTTTCATCT CATGTCACGG CATCGCTGGA GCTGCCTAGT CCTGCCATCC ATCATCCACT TTCTTGGCTA CTCACGTCGA TTGATGAAGT GATGGCGCGT CAAGCCCTAC TCGGTGGCAG TGTACACATC AATTGCCCAT TTCCTGAGCC CTTGTATTCG GCTGGGGATG AGGCGATTTA TCAACCCTAT TTACAACCTG TTCAGCGTTG GCGTGAGCAA GCTCGGCCTT ATACCCAAGT TCATCAAGGA TTAGTGCAGA GTGTTCCCGC TGCAATCGAT GGCTTGCTGA CTAAAGGGGT GGTGATAGTT GGCTCGCTGA GCTTGCAAGA GGCTCAAGCG GCAAAGCGTT TTGCCAAAGC GATGGGCTGG CCGTTACTGT GCGATCCACA ATCGGGCATC AGTAGCCAAT GGGCACATTT TGATCTCTGG CTGCAGCATC CCAAAGCACG TGAACAGCTC AATCAAGCTC AATGTGTGGT GCAATTTGGT TCGCGGATTG TCTCCAAACG TCTGTTGCAG TGGTTAGAAG CGTGGTGCGC CACGGGTCTT GGCGAGTATC ATTACATTGC GCCGCACAGC GCACGCAATA ACCCTTGGCA CGCCATGCAG CAGCAGTGGG TGTGTGAGAT TAGCCACTGG GTAGACGCTG TGCTCAGCAA ACGCTTAGCG GGTCAACATA CCCAGCAAGG TTGGGCCGAT GAGTTAACCC ATTATGCGCA GTCGGTTCGC CAACTGGCGC AACTGCATTT CTCCTCTTCT TCCCTGAGTG AAGTCGCACT GGCGCTAGAT TTGACGGAGC GCGCTACGCA AGCGGATCTG TTTTTGGGCA ACAGCCTGAT TGTGCGTTTG GTGGATATAT TCAGCGCGCT TGATGGGCGT GAAGTGTTCT CCAATCGTGG CGCATCTGGC ATTGATGGCT TAGTCGCCAC AGCGTCAGGG GTGCAACGTG CGCGGCAAAA GCCATTACTG ATGCTGCTGG GAGATACCTC GCTACTGTAC GATCTCAACT CGCTCGCGTT GATGCGCAAT CCTGCGCAGC CGACCGTGAT AGTCGTGACC AATAACGACG GCGGAGCGAT TTTCGATCTC CTGCCTGTGC CGAGTGAGCA GCGCGAAGCG CTCTATCAAA TGCCGCATGG AATGGACTTT GCTCACGCCG CATCACAATT TGGTTTAGCG TATTGTGCGG CGCAAACCTT AGAGCACTAC CAAACCTTGG TGGAAGAGCA TTTTGCACAC GGTGCAGGTA CTTTGCTTAT CGAGGTGAAA ACCCCGCCGC AGCAAGCTTC CATGCACATC AAACAACTGA CATCGCAACT CCATGCTCTC TAA
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Protein sequence | MNRDQALLNR LWSRVLLEEL SRLGVTQVCV APGSRSTPLT LEANANTAFT LHTHYDERGL GFMALGLAKA SQQPVAVIVT SGTAVANLLP AIAESKLTGE RLVVLTADRP LELVGCGANQ AIVQSGIFSS HVTASLELPS PAIHHPLSWL LTSIDEVMAR QALLGGSVHI NCPFPEPLYS AGDEAIYQPY LQPVQRWREQ ARPYTQVHQG LVQSVPAAID GLLTKGVVIV GSLSLQEAQA AKRFAKAMGW PLLCDPQSGI SSQWAHFDLW LQHPKAREQL NQAQCVVQFG SRIVSKRLLQ WLEAWCATGL GEYHYIAPHS ARNNPWHAMQ QQWVCEISHW VDAVLSKRLA GQHTQQGWAD ELTHYAQSVR QLAQLHFSSS SLSEVALALD LTERATQADL FLGNSLIVRL VDIFSALDGR EVFSNRGASG IDGLVATASG VQRARQKPLL MLLGDTSLLY DLNSLALMRN PAQPTVIVVT NNDGGAIFDL LPVPSEQREA LYQMPHGMDF AHAASQFGLA YCAAQTLEHY QTLVEEHFAH GAGTLLIEVK TPPQQASMHI KQLTSQLHAL
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