| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1484 |
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| Symbol | |
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| ID | 5137329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1594550 |
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| End bp | 1595140 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532942 |
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| Product | putative lipoprotein |
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| Protein accession | YP_001217427 |
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| Protein GI | 147673411 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.233925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA GTGTCATTGC CCTGCTAGGT TTGGCGGTTA TCTTAGGGGG ATGTTCGAAT
AAAGTGAGCT ACGGTGATGC GCAAGCGGTA GAAACCGTCA ATGTTGACTT TGGTTCGACC
GACCTGCAAA AAATTGCTGC AGAAATGGTG GATAGCATGA TGATGTCAGG CTCGGTTTCT
GCCATCACTC GCGATGGTCG CCCGATTGTG TTTGTTGAAC GTATTAAGAA CAAAACCAGT
GAACATATTG ATACCGAATC GATCACGGAC ACCATAAGCA CCAAGATGCT TAATTCAGGC
AAGTTCCGTT TCGTCGATAT GGATCGTGTT GAAGCGGTTC GCGATCAGTT GAACTTCCAG
AATAATGACG AACTCGTCAA CCAAAGCACA GCGATCCAGT TTGGTAAGAT GGTCGGCGCG
CAATACATGC TGTACGGCAA TCTATCGAGT ATCGTGAAAA ACGCGGGTAG TGATAAAGAT
GTCTACTACA AGATGACCAT GCGTTTGATG GATCTACAAA CAGGTTTAAT TGAGTGGGCT
GACGAAACCG AAATCCGTAA GCAACAGTCA AAGAGCTTAC TCGGTTTGTA A
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| Protein sequence | MKKSVIALLG LAVILGGCSN KVSYGDAQAV ETVNVDFGST DLQKIAAEMV DSMMMSGSVS
AITRDGRPIV FVERIKNKTS EHIDTESITD TISTKMLNSG KFRFVDMDRV EAVRDQLNFQ
NNDELVNQST AIQFGKMVGA QYMLYGNLSS IVKNAGSDKD VYYKMTMRLM DLQTGLIEWA
DETEIRKQQS KSLLGL
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