| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1473 |
|---|
| Symbol | |
|---|
| ID | 5136654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1580904 |
|---|
| End bp | 1581590 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532931 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_001217416 |
|---|
| Protein GI | 147675470 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACC TTTTACGTTG TCATCAGGTT TGCAAAACCT ATCAAGAAGG GGAGTTGCAA
ACTCAGGTTC TTAAAGGGGT GAGTTTTGAG CTAAAACGCG GTGAGTTGGT CTCAATCATC
GGCTCTTCTG GCTCAGGCAA AAGTACCTTG CTGCATATTT TGGGTGCACT GGATGACGCC
AGTGAAGGGC AAGTGGAGTT TCTTGGCCAG TCTTTGCATC AGTTAAGTTC GAATAAGCAA
GCGAAGATCC GCAATCAGCA CTTGGGATTT GTTTATCAGT TTCACCATTT GCTGGCGGAT
TTTTCTGCTT TAGAAAATGT GGCGATGCCA CTCTTGATTG GTGGCATGAA TGTGGCGAAA
GCCAAAGCGA AGGCGCAGAG CCTGCTTGAG CGAGTGGGTT TAGGCCATCG CGTGGCGCAT
CGTCCATCGG AATTATCTGG TGGCGAAAGA CAACGCGTCG CCATTGCTCG CGCGTTAGTC
AATAAGCCGG ATTTGGTGCT GGCCGATGAA CCGACGGGCA ATCTGGACCA TAAAACGGCG
CTGTCTATTT ACGATTTGAT GCGTGAGTTG AACCGCGAAT CCGGTACCGC CTTTTTGGTG
GTCACTCACG ATGGCGAGTT GGCGGCGAAA ATGGATCGTC ACATGCACAT GAAAGATGGG
CTGCTAACCG ATATCACGGG GGCTTAA
|
|---|
| Protein sequence | MNNLLRCHQV CKTYQEGELQ TQVLKGVSFE LKRGELVSII GSSGSGKSTL LHILGALDDA
SEGQVEFLGQ SLHQLSSNKQ AKIRNQHLGF VYQFHHLLAD FSALENVAMP LLIGGMNVAK
AKAKAQSLLE RVGLGHRVAH RPSELSGGER QRVAIARALV NKPDLVLADE PTGNLDHKTA
LSIYDLMREL NRESGTAFLV VTHDGELAAK MDRHMHMKDG LLTDITGA
|
|---|
| |