| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1472 |
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| Symbol | |
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| ID | 5137671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1579659 |
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| End bp | 1580903 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532930 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolE |
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| Protein accession | YP_001217415 |
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| Protein GI | 147674975 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family
[TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTTTCCT CTCTCGCTCT GTTTATTGGC GGACGCTTTA GTCGCGCTAA ACAACGTAAC
AAGATGGTGT CGTTTATTTC GTTGTCGTCC ACGATTGGGA TTGCGGTTGG TGTGGCGGTG
ATCATCATCG GCCTTTCGGC GATGAATGGT TTTGAGCGTG AATTGCAAAC CCGTGTTCTA
TCCGTTATCC CACATGGGGA ATTTGAGGGC GTGCGCGGAC CTGTCGAACG CTGGCCTGAT
TTAATGGCGC AAGCCGCGCG TCACCCACAA ATTGTTGCGG CAGCGCCGTA TGTGAAGATC
ACAGCACTTG CCGAAAGTGG CACTCAGCTT AAAGCGATTG AAGTGCGCGG TGTGGATCCG
CAGCGTGAGC AAGCCGTATC TCGCTTGTCG CAGTTTATTA CCGCGCAGGC ATGGCAAGAC
TTTCGCCCCG GTCAGCAGCA GGTGATTTTA GGCCAAGGTG TTGCGGAGAA ATTAGGCGTG
CAGGTTGGTG ATTTCATTAC CTTGATGATC CCAAGTGCCA ACAGTGGTGA CAAGGTGCAA
GCACCGAAGC GGGTCCGTGT GAAAGTCAGC GGCTTATTGG CACTGAACGG GCAGATTGAT
CACAGCTTAG CGCTACTGCC GCTAGAAGAT GCCCAAGCTT ATGCTCACTT AGGTAGTGGT
GTTACCGGTA TCTCTGTTAA GGTGGCCGAT GTGCTGCAAG CAACGCAGAT CGTACGTGAT
GTGGGTAATC AACTGAACGA ATACGTCTAT CTGCATAGTT GGCAGCAAAA GTACGGCTTT
TTGTATCGCG ATATTCAGTT GGTGCGCACC ATTATGTATT TAGTAATGGT ACTGGTGATT
GGGGTCGCGA GCTTTAACAT CGTCTCGACT CTGATGATGG CGGTAAAAGA TCGCGCAGGC
GAAATCGCTA TATTGCGCAC TATGGGCGCG ACCGATGGCT TGATCAAACG TATTTTCGTC
TGGCAAGGCG TGTTTTCTGG GGTTCTGGGT AGTGTGGTCG GCAGTGTATT GGGTATGGTT
GTCGCCTTTA ATTTAACGCC TTTGATCAAA GGGTTAGAGC ATCTGATCGG ACATCAGTTT
TTATCCGGTG ATATCTATTT CGTTGATTTT CTTCCTTCAC AGGTGGAGTG GGCAGATGTA
GTGCTGGTTT CAGGGACGGC GATTGTGCTG AGTTTGCTGG CGACTTGGTA CCCCGCGCGG
CGCGCAAGCC GACTCAATCC TGCGCAAGTG TTGAGTAGTA AATAA
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| Protein sequence | MFSSLALFIG GRFSRAKQRN KMVSFISLSS TIGIAVGVAV IIIGLSAMNG FERELQTRVL
SVIPHGEFEG VRGPVERWPD LMAQAARHPQ IVAAAPYVKI TALAESGTQL KAIEVRGVDP
QREQAVSRLS QFITAQAWQD FRPGQQQVIL GQGVAEKLGV QVGDFITLMI PSANSGDKVQ
APKRVRVKVS GLLALNGQID HSLALLPLED AQAYAHLGSG VTGISVKVAD VLQATQIVRD
VGNQLNEYVY LHSWQQKYGF LYRDIQLVRT IMYLVMVLVI GVASFNIVST LMMAVKDRAG
EIAILRTMGA TDGLIKRIFV WQGVFSGVLG SVVGSVLGMV VAFNLTPLIK GLEHLIGHQF
LSGDIYFVDF LPSQVEWADV VLVSGTAIVL SLLATWYPAR RASRLNPAQV LSSK
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