Gene VC0395_A1429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1429 
SymboltolB 
ID5135619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1530223 
End bp1531575 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content45% 
IMG OID640532887 
Producttranslocation protein TolB 
Protein accessionYP_001217372 
Protein GI147674437 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000134537 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTAAGC GATTAGTTTT TGTTTTGATG CTCATCGGTA CCGGTTTTTC CAATATTGCG 
AATGCAGCAT TGGAGCTAGT TATTACTGAC GGTATTGATT CTGCACGTCC GATTGCGATA
GTTCCTTTCA AATGGGAAGG CGCAACCAAG TTGCCTGAAG ACGTTTCTGC GGTGATTGCC
TCTGACTTAC AGCGCAGTGG TAAATTTAGC CCAGTTCCGA CCAGCAAAAT GCCACAGACG
CCTTATAGCG AAGAGCAGGT TAACTTTGGC AAATGGACAT CTATGGGGGT CGATTCATTA
TTGACGGGTA CGATCACGCA AAATGCGGAA GGTAGCTATG TAATTAGTTA TCAACTGGTT
GACATTGTGC GTGGACAACT GACTCAAGGC CAAAGCAAAG CTCTGTCTCA AGATGGTCAA
TTGGTGCTAT CTAAAGATCA TGTTTTGTTT AATAAAGTGG CGACCGTTCC TGCATCAAGA
ATGCGTGAAT ATGCCCACCG TATTGCGGAC TTGGTTTATG AGGAATTGAC CGGTGAACGC
GGCGCCTTCT TAACGCGCAT CGCTTACGTT GTGGTCAATG ATAAGGATCC GTATCCTTAT
CAACTGAGAA TTGCTGATTA TGACGGCTAT AACGAACGTC TTGTACTTCG TTCTAAGCAG
CCGCTTATGT CACCTGCTTG GTCACCTGAT GGTCAGACTT TGGCTTACGT GAGTTTCCAA
AACGGACAAG CCGAAATTTA CATGATGAAC ATCTACAGTG GGAAGCGAGA GAAGCTGACG
TCATTCCCAC GTCATAATGG TGCACCCAGA TTCTCACCAG ATGGTAAAAC GCTAGCGCTG
GTTTTATCAA AAACTGGTAA TTTACAGGTC TACACGATGG ACTTGGCTAC ACGTCGCTTA
ACAGAGGTGA CTAGTGGCCG TTCCAACAAC ACCGAACCTT TCTGGCATCC AGATGGTAAA
TCTTTAATTT TCACTTCAGA TCGGGGTGGT AAACCACAGA TTTATCAAGT AAATTTATCC
GGCGGTGAAA CCAAGCGTTT AACTTGGCAA GGTAGCCAAA ACTTGGGTGG CCAAATTACA
CCGGATGGAA AATTCTTGGT GATGGTGAAT CGTAGTGATT CCGGCTTCAA TCTCGCGAAG
CAGGATTTAG AAACAGGGGC AATGCAGATT CTGACAAAAA CCTTGTTAGA TGAGTCCCCA
AGTATTGCGC CGAATGGTGG TATGGTGATT TATAGCTCCA TCTACAATAA GGCCAACGTC
TTGTCGATGG TATCCATTGA TGGACGCTTT AAAGCAAGAT TACCGGCAAC CAATGGGCGC
GTTCGTGCTC CAGCATGGTC ACCGTTTTTA TAA
 
Protein sequence
MFKRLVFVLM LIGTGFSNIA NAALELVITD GIDSARPIAI VPFKWEGATK LPEDVSAVIA 
SDLQRSGKFS PVPTSKMPQT PYSEEQVNFG KWTSMGVDSL LTGTITQNAE GSYVISYQLV
DIVRGQLTQG QSKALSQDGQ LVLSKDHVLF NKVATVPASR MREYAHRIAD LVYEELTGER
GAFLTRIAYV VVNDKDPYPY QLRIADYDGY NERLVLRSKQ PLMSPAWSPD GQTLAYVSFQ
NGQAEIYMMN IYSGKREKLT SFPRHNGAPR FSPDGKTLAL VLSKTGNLQV YTMDLATRRL
TEVTSGRSNN TEPFWHPDGK SLIFTSDRGG KPQIYQVNLS GGETKRLTWQ GSQNLGGQIT
PDGKFLVMVN RSDSGFNLAK QDLETGAMQI LTKTLLDESP SIAPNGGMVI YSSIYNKANV
LSMVSIDGRF KARLPATNGR VRAPAWSPFL