| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1363 |
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| Symbol | |
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| ID | 5137389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1458893 |
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| End bp | 1461961 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640532821 |
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| Product | putative type I restriction enzyme HsdR |
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| Protein accession | YP_001217306 |
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| Protein GI | 147674712 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTATTTA TGGTTAGTAA AACAAATGAA CAGGCGCTAG AGGCCGCAAT CGAAAAAGGT
TTAGCAGGTA TTTGTAAAGA AGAGTTAGCG CTGGGTGAAG CGCCTCTTAA TTACAATAAT
GATCTTTATC TTATTGGCTC TCCAAGTGAC TTTGACAAGC AGTACGCTTT AGATACCCGT
TTGTTTTGGC AATTCCTCGA AGATACTCAA GCGAGTGAGT TAGAAAAACT TAAGCGCACC
AGCCCTCACG ATTGGCAGAG AAAAATCCTT GAGCGTTTCG ATCGTATGAT CAAGCGCCAT
GGTGTTTTGC GACTATTGAA AAAAGGGCTA GACGTTGACG ATGCCTTTCT ATCGTTGATG
TACCCGGCAC CACTCGCCAG TAGTTCTGAG AAGGTAAAAA AAGATTTTTC TGCCAACCTG
TTTAGTGTGA CTCGCCAGGT TTGTTATTCC AATGCAAATC CATTGGAAGA AATTGACATG
GTGCTTTTTA TCAATGGTAT CCCTCTGATT ACCCTTGAGC TTAAAAACCC ATGGACGGGC
CAGAACGCTG TTTATCATGG TCAAAAGCAG TACCGCGATG ATAGAGATGC AAATCAGCCA
TTGTTGAACT TTGCTCGTTG CTTGGTTCAC ATGGCGGTCG ATACCGATGA AGTCTATATG
ACGACTAAGC TGGCAGGCAA AAATACCTTC TTCCTGCCGT TCAACAAAGG CTTCAACTTT
GGCAAAGGTA ACCCGATTAA TCCACATGGG CACAAGACGG CCTACTTGTG GCAAGAGGTA
TTCCGCAAAG AAAGCATCGC CAATATTATT CAGCACTTTA TTCGTCTTGA TGGCAGCAGT
AAAAAGCAGT TGGACAAACG AACTTTGTTC TTCCCTCGAT ATCACCAAAT GGATGTCGTA
CGTCGCTTGG TTGATCACTG CTCAGTTAAT GGTGTTGGGC AAACGTATTT GATACAGCAC
TCAGCGGGGT CAGGTAAATC TAACTCAATT ACATGGGCGG CGTATCAGCT CATCGAAACT
TACCCTATTA GCGATGATCT ACCAGGAAGT AGAGGAAAAG AAATGCCTCT ATTCGATTCG
GTCATCGTTG TTACTGACCG CCGATTGCTC GATAAGCAGT TACGCGACAA TATAAAAGAG
TTCTCTGAAG TGAAGAACAT TGTTGCGCCT GCGTTTAAAT CGTCAGAACT AAAGTCAGCA
TTAGAGAATG GTAAGAAAAT CATCATTACC ACCATTCAAA AGTTTCCCTA TATTGTCGAT
GGTATTGCAG ACTTAAGTGA TAGGCGCTTT GCTGTCATCA TTGATGAAGC ACACAGTTCG
CAGGATGGGC ATAACCAAGA TAAGTTAAAT GAAGCAATGG GGTTTGTTTC GGAGGATGTT
TTAGACAAAG CATTACAAAG TGCGAAAAAT CGTAAGATGC GCTCAAATGC ATCTTACTTT
GCATTCACCG CAACGCCCAA AAACACCACT CTAGAAAAGT TTGGTCAGCG ACAAGCAGAC
GGAACTTATG TTCCTTTTCA TTTGTACTCG ATGAAACAAG CCATCGAAGA AGGGTTTATC
CTCGATGTTA TTGCCAATTA CACGACCTAT AAGAGCTACT ACGAGATTGA AAAATCAATC
CAAGATAACC CTGAGTTTGA CAGCAAAAAA GCACAGAAGC GCTTACGAGC GTATGTAGAG
GCAAGCCAAG AGACGATAGA CACTAAAGCC GAGATCATGC TTGAGCATTT CATCAAGCAT
GTCGTTAACG GCAAGAAGCT AAAAGGTAAA GGCAAAGGTA TGGTGGTGAC TCAAAACATT
GAGTCAGCCA TACGTTACTA TCGGGCACTA ACCAGACAGC TCAATAAAAT GGGCAATCCG
TTTAAAGTTG CCATTGCATT CTCTGGCTCA AAAGAAGTCG ATGGGATTGA GTACACAGAA
GCTGACATTA ATGGTTTCCC AGAAGGTGAT ACCAAAGATT ACTTTGATGT GAACTACAAG
CGTAAGGAGC CGGACTCTCC AATCCCTAAG CACGTAGACC AAGATGCTTA CCGGTTGCTG
GTAGTGGCGA ATAAGTATTT AACAGGCTTT GATCAGCCGA AACTTTGTGC CATGTACGTG
GATAAAAAGT TGGCTAGCGT TTTGTGTGTC CAAGCTCTGT CACGCTTAAA CCGTTCAGCG
CCAAAGTACG GTAAGAAAAC GGAAGATCTG TTTGTGTTGG ATTTCTTCAA CTCAGTGGAT
GATATCAAAA CCGCATTCGA CCCTTTCTAT ACATCCACAA CGCTTTCTGA AGCGACAGAT
GTCAATGTTC TTCATGAGCT AAAAGATGAT ATGGACGACA CAGATGTTTA TGAGTGGTTT
GAAGTTGAGG AGTTCAACAA GCGTTTCTTT GAAGGACGAG AGGCTCAGGA CCTAAGCCCA
ATCATTGACA TCGCAGCTGC GCGTTTTAAC CACGAGTTAG AACTAGAGAA CGAGTTTAAA
GTCGATTTCA AAGTGAAAGC CAAGCAGTTT GTGAAAATCT ACGGCCAGAT TGCATCTATC
ATGCCTTATG AGGTCGTTCA GTGGGAAAAA CTGTTCTGGT TCTTGAAATT TTTGATTCCG
AAGCTTTCCG TCGAAGACCC AGATAAAGAA GCACTAGACT CATTACTAGA TTCAGTTGAT
TTGAGCTCTT ATGGATTACA AAGGGTTAAG CTTAACCATT CCATCGAGCT AGATGACTCT
GAAACTGAGT TAGATCCTCA AAACCCGAAC CCGCGCGGGG CTTATGGTCC TGAAGCTGAG
AAAGATCCGT TAGATGAGAT CATCAAAATC TTTAACGAAC GCTGGTTCCA AGGCTGGAGC
GCAACACCAG AAGAGCAGAG AGTTAAGTTT GTGAACATTG CTGAGAGCAT CCGAAATCAC
CCAGATTTCG AAGCTAAATA CCAAAACAAC GCAGACCCTC ATACGCGAGA GTTAGCGTTT
GAAAAGATGT TGAAAGAAAT CATGCTTCAA CGTCGTAAAG ACGAGTTAGA GCTCTACAAG
CTGTTTGCCC AAGACCCAGC TTTTAAAGCG TCTTGGACGC AGAGCATGCA GCGTATGGTT
GGGATGTAA
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| Protein sequence | MVFMVSKTNE QALEAAIEKG LAGICKEELA LGEAPLNYNN DLYLIGSPSD FDKQYALDTR
LFWQFLEDTQ ASELEKLKRT SPHDWQRKIL ERFDRMIKRH GVLRLLKKGL DVDDAFLSLM
YPAPLASSSE KVKKDFSANL FSVTRQVCYS NANPLEEIDM VLFINGIPLI TLELKNPWTG
QNAVYHGQKQ YRDDRDANQP LLNFARCLVH MAVDTDEVYM TTKLAGKNTF FLPFNKGFNF
GKGNPINPHG HKTAYLWQEV FRKESIANII QHFIRLDGSS KKQLDKRTLF FPRYHQMDVV
RRLVDHCSVN GVGQTYLIQH SAGSGKSNSI TWAAYQLIET YPISDDLPGS RGKEMPLFDS
VIVVTDRRLL DKQLRDNIKE FSEVKNIVAP AFKSSELKSA LENGKKIIIT TIQKFPYIVD
GIADLSDRRF AVIIDEAHSS QDGHNQDKLN EAMGFVSEDV LDKALQSAKN RKMRSNASYF
AFTATPKNTT LEKFGQRQAD GTYVPFHLYS MKQAIEEGFI LDVIANYTTY KSYYEIEKSI
QDNPEFDSKK AQKRLRAYVE ASQETIDTKA EIMLEHFIKH VVNGKKLKGK GKGMVVTQNI
ESAIRYYRAL TRQLNKMGNP FKVAIAFSGS KEVDGIEYTE ADINGFPEGD TKDYFDVNYK
RKEPDSPIPK HVDQDAYRLL VVANKYLTGF DQPKLCAMYV DKKLASVLCV QALSRLNRSA
PKYGKKTEDL FVLDFFNSVD DIKTAFDPFY TSTTLSEATD VNVLHELKDD MDDTDVYEWF
EVEEFNKRFF EGREAQDLSP IIDIAAARFN HELELENEFK VDFKVKAKQF VKIYGQIASI
MPYEVVQWEK LFWFLKFLIP KLSVEDPDKE ALDSLLDSVD LSSYGLQRVK LNHSIELDDS
ETELDPQNPN PRGAYGPEAE KDPLDEIIKI FNERWFQGWS ATPEEQRVKF VNIAESIRNH
PDFEAKYQNN ADPHTRELAF EKMLKEIMLQ RRKDELELYK LFAQDPAFKA SWTQSMQRMV
GM
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