| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1354 |
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| Symbol | |
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| ID | 5136354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1444449 |
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| End bp | 1445543 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532812 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001217298 |
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| Protein GI | 147675452 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000336467 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCTT CTTTTACTCG TTCAATGGCT GCAAAGCGCT CCTTGCTTAG CGCGGTGATC
GCCTCGGCTT TATTGTTGGC TGGCTGCGGT GAAGCGCCAC AAATCAGCGC CCCCGCTCCT
GTGGTCAAAC CCGCATTAAC CGAGATTGTC GCAAGTCAAC GCGCTTCCGA TCTCACGTTT
AATGGCGTAG TGCGCGCCGC CCAGCGCGCT GATCTTGCTT TTCGCATCAG TGGCCGCTTA
ACGGATATCG CGGTAAAAGA AGGCGACCAA GTGAAAAAAG GCCAATTACT GGCGAGCCTC
GACTCACGAG ATGCCAAAAC GGCGCTGGAA GCTGCGCAAC TTGAGCTAAA AAATACCGAA
CAAGAGTACC GCCGCGCCAA AGCCATTTTT GAGAAAACCC AAGCCATTTC TAAAGCCGAG
CTGGATAAAG TCACCAATCG CTACGACCTT GCCAAAAACC GCGTTGAAGA GGCCAAACGC
AAACTGGAGT ACACCCAAAT CACCGCCCCG TTTGATGGCG TCATCAGTGA AAAAACCATC
GAGAATTTTG CTCAAGTGCA AGCCAATCAA GTGATCATGA TTTTGCAAGA TCTGAATGAT
TTGGAAGTGG CGATTGAGAT CCCGCATCGT GTCATGCTCT CAGGTGTGCG CAATACCCGC
GCGATCGCCG AGTTAAGCGC GATTCCCAAT CAGCAATTTG ATTTAAAGCT GCGTACCTAC
TCCACTCAGC CAAGTTCGGA TTCACAAACC TACTCTGTAG TGCTTGGTTT TGAAGATTTG
AAAGGCTTTC GCGTGATGCC CGGCATGTCA GCTAAAGTGA TCCCGGTTGC CGACAAACCA
GCCGATGAAA ACACGCTCAT CACCCTACCA CTGACCGCCC TAGTGCCAGA TAACCAAGGC
AAACAATTTG TGTGGGTAGT CAATGCGCAA AACCAAGCGG AAAAACGTTA CGTCGACATC
GGAACTACCT ACAAAGATCG AGTGGTGATC ACTCAGCATC TCAAACCGGG TGAGCAGGTT
ATTATCGCCG GTGTTTCGAG CGTACGCGAA GGCATGACCG TTCGTCCCTA CACGGATAAC
AACGGAGCCC AATAA
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| Protein sequence | MNPSFTRSMA AKRSLLSAVI ASALLLAGCG EAPQISAPAP VVKPALTEIV ASQRASDLTF
NGVVRAAQRA DLAFRISGRL TDIAVKEGDQ VKKGQLLASL DSRDAKTALE AAQLELKNTE
QEYRRAKAIF EKTQAISKAE LDKVTNRYDL AKNRVEEAKR KLEYTQITAP FDGVISEKTI
ENFAQVQANQ VIMILQDLND LEVAIEIPHR VMLSGVRNTR AIAELSAIPN QQFDLKLRTY
STQPSSDSQT YSVVLGFEDL KGFRVMPGMS AKVIPVADKP ADENTLITLP LTALVPDNQG
KQFVWVVNAQ NQAEKRYVDI GTTYKDRVVI TQHLKPGEQV IIAGVSSVRE GMTVRPYTDN
NGAQ
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