Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1279 |
Symbol | |
ID | 5137489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1361334 |
End bp | 1362413 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640532737 |
Product | HlyD family secretion protein |
Protein accession | YP_001217223 |
Protein GI | 147675113 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATAA TTCGTTACAC CGCTTGGTTG GCTCACTTAC TGTTGATCGC AGGATGCAGT GAACCCACGA AGCTTGAACG CGATACGCTA CCGCGAGTAA AGGTGGCGCA GGCAGGTGAA AAAGTCAGTG ATAAGCTCTT TTTTCCTGCG GTGGCCAATG CGGCTGAACG TTCTCATTTG AGTTTTCGAG TGGCAGGTGA AATCAGTAAG TTCCATGTCA AAGAGGGCGC TCGCGTTAAG CAAGGCGACA TCTTGGCTGA AATTGAGCCG ACCGATTACC GTTTGGCTGT CGATAATGCT CAAGCACGAT TTTCCGTGAT TGATAGCCAA TATCGGCGTT CACAACCACT GGTCGAAAAA GGCTTATTAG CCAAATCACA GTTTGACGAA ATTGCTGCGC AGCGCCAAAT CGCTCGTGCT GAGCTTGAGT TGGCGAAACT TCGTCTCTCC TTCACCCAAT TACGCGCACC AATGGATGGC ATCATCTCGC GTGTCAGCGC TGAGCAGTTT GAAAGTGTTC AGGTTGGCCA ACAAATCGTC AATATTCACA ATATCGATAG CGTTGAAGTT TTGATTCAAC TGCCTGATCG CCTGTATGCG ACACAACCGA CGGCCAGCGA GTTGGCGAAG ATAGAAACCG TGGTGCGTGT CCCAAGTGGT CAAGTTTATC CCGCACGTAT CAAAGAATTC ACCACTGAGC CAGACCCTGC CACGGGGACA TTTACTGTCA CCCTTTCTCT GCCCATGCCA GAGCAAGAAC TGATCTTGGA TGGCATGGCT GTTGAAGTGA GTGCCAAAGG GCAACATGTC GGGCTAAACC CACTCAACAC CATCAGTATT CCGATTGAGG CGATTTTTAA TGCCGACGGT GATGAGTTAG ACAAAACTGC TCAATATGTT TGGTTGCTCA ACAACGACAA TACGGTGAGC AAACGTCAGG TGCGGTTAGC GAAAGCGTCA CGCAGCCATG TTCAAGTCAG TGAAGGAATT AACGCGGGAG ATCGTTTAGT GGTCGCTGGC GTTGCAAGAT TGAGAGATGG AATGAAAGTA CAAATCCTTG AGGAGCGTGG CCATGAGTGA
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Protein sequence | MKIIRYTAWL AHLLLIAGCS EPTKLERDTL PRVKVAQAGE KVSDKLFFPA VANAAERSHL SFRVAGEISK FHVKEGARVK QGDILAEIEP TDYRLAVDNA QARFSVIDSQ YRRSQPLVEK GLLAKSQFDE IAAQRQIARA ELELAKLRLS FTQLRAPMDG IISRVSAEQF ESVQVGQQIV NIHNIDSVEV LIQLPDRLYA TQPTASELAK IETVVRVPSG QVYPARIKEF TTEPDPATGT FTVTLSLPMP EQELILDGMA VEVSAKGQHV GLNPLNTISI PIEAIFNADG DELDKTAQYV WLLNNDNTVS KRQVRLAKAS RSHVQVSEGI NAGDRLVVAG VARLRDGMKV QILEERGHE
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