Gene VC0395_A1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1279 
Symbol 
ID5137489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1361334 
End bp1362413 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content49% 
IMG OID640532737 
ProductHlyD family secretion protein 
Protein accessionYP_001217223 
Protein GI147675113 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAA TTCGTTACAC CGCTTGGTTG GCTCACTTAC TGTTGATCGC AGGATGCAGT 
GAACCCACGA AGCTTGAACG CGATACGCTA CCGCGAGTAA AGGTGGCGCA GGCAGGTGAA
AAAGTCAGTG ATAAGCTCTT TTTTCCTGCG GTGGCCAATG CGGCTGAACG TTCTCATTTG
AGTTTTCGAG TGGCAGGTGA AATCAGTAAG TTCCATGTCA AAGAGGGCGC TCGCGTTAAG
CAAGGCGACA TCTTGGCTGA AATTGAGCCG ACCGATTACC GTTTGGCTGT CGATAATGCT
CAAGCACGAT TTTCCGTGAT TGATAGCCAA TATCGGCGTT CACAACCACT GGTCGAAAAA
GGCTTATTAG CCAAATCACA GTTTGACGAA ATTGCTGCGC AGCGCCAAAT CGCTCGTGCT
GAGCTTGAGT TGGCGAAACT TCGTCTCTCC TTCACCCAAT TACGCGCACC AATGGATGGC
ATCATCTCGC GTGTCAGCGC TGAGCAGTTT GAAAGTGTTC AGGTTGGCCA ACAAATCGTC
AATATTCACA ATATCGATAG CGTTGAAGTT TTGATTCAAC TGCCTGATCG CCTGTATGCG
ACACAACCGA CGGCCAGCGA GTTGGCGAAG ATAGAAACCG TGGTGCGTGT CCCAAGTGGT
CAAGTTTATC CCGCACGTAT CAAAGAATTC ACCACTGAGC CAGACCCTGC CACGGGGACA
TTTACTGTCA CCCTTTCTCT GCCCATGCCA GAGCAAGAAC TGATCTTGGA TGGCATGGCT
GTTGAAGTGA GTGCCAAAGG GCAACATGTC GGGCTAAACC CACTCAACAC CATCAGTATT
CCGATTGAGG CGATTTTTAA TGCCGACGGT GATGAGTTAG ACAAAACTGC TCAATATGTT
TGGTTGCTCA ACAACGACAA TACGGTGAGC AAACGTCAGG TGCGGTTAGC GAAAGCGTCA
CGCAGCCATG TTCAAGTCAG TGAAGGAATT AACGCGGGAG ATCGTTTAGT GGTCGCTGGC
GTTGCAAGAT TGAGAGATGG AATGAAAGTA CAAATCCTTG AGGAGCGTGG CCATGAGTGA
 
Protein sequence
MKIIRYTAWL AHLLLIAGCS EPTKLERDTL PRVKVAQAGE KVSDKLFFPA VANAAERSHL 
SFRVAGEISK FHVKEGARVK QGDILAEIEP TDYRLAVDNA QARFSVIDSQ YRRSQPLVEK
GLLAKSQFDE IAAQRQIARA ELELAKLRLS FTQLRAPMDG IISRVSAEQF ESVQVGQQIV
NIHNIDSVEV LIQLPDRLYA TQPTASELAK IETVVRVPSG QVYPARIKEF TTEPDPATGT
FTVTLSLPMP EQELILDGMA VEVSAKGQHV GLNPLNTISI PIEAIFNADG DELDKTAQYV
WLLNNDNTVS KRQVRLAKAS RSHVQVSEGI NAGDRLVVAG VARLRDGMKV QILEERGHE