| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1210 |
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| Symbol | |
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| ID | 5135665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1271722 |
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| End bp | 1273338 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532668 |
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| Product | putative sensor kinase citA |
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| Protein accession | YP_001217154 |
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| Protein GI | 147673767 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000551679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGTGGA GCAGTATCAC CTTCCGCAAG AGAATGCTGA TCATCATGAC CTTATCGGGT
CTGATTGAGC TGCTACTTTT GGTTGCCGCA GGGTTTATGT ACGTCAAACA TTCTCAAGAG
CAAGAGGTTG GCCAGAAAGC GCTGGGCGTT GCGGCATTCC TTGCACAAAC TCCAGCGGTC
ATCAACATGA TCAAGACCGG CCGTGCTTCC GATGATCAGC AGCAAAGCTA TCGTGAACTG
ACTCAACTAA TAGGCGCAGC GTTTATTGTG ATTGGCGACA ATCAAGGTAT TCGATTAGTT
CATCCCATTG ATGAAAGGAT CGGTAAGCCT ATGGTGGGGG GCGATAACGA GAGAGCGCTA
GTGGAAGGCG AAGCTTATGT CTCTTTCGCT CAAGGTTCGT TAGGCAAATC GGTTCGTGGT
AAAGCGGCGG TGGTGGATCA ACACGGTCAA ATCATCGGTG TCGTTTCGGT TGGCTATTTA
ATTGAGCGGC TACAAGACCG CGTTGAGCCA TTTTTATTCT ATCTGATTGC TACCGCGTTA
CTGGTGGTAG GCGCCAATGC ACTGGTTTCT AGCTATGCCT CACGACGTTT TCAGCGCGCT
ATTTTGGGGT TTGAGCCGGA AGAAATTGCC CGTTTGTACG TGGAACTGGA TGTGACCATG
AGCACCCTCA AAGAAGGGAT CATCAGTATT GATGACAAAG GGATCTTACG TTCGATCAAT
AAAAGTGCTT GTGAAATTTT GGGATTACGC CGCGAACAAG CTCTTAATCG ACGCTTGACC
ACCATTCTGC CAGAAAGTGA TCTCTATACG GTTTTGGCGA CCGGAAGAAC CGATCACGAT
ATTGAGCTCT ATCTGAATAA GCATTGGATA ATTGCCAACC GCAGCCCGAT CGTGGTTGAG
GGAAAAGTCG TCGGGGCGGT ATCCAGTTTC CGTCTCCGTG ATGAAATTAA TGAACTCACT
GAGCAGTTGG CCCAAACCCG TGAGTACGCA GAGATGCTGC GTTCTCAGAC CCATGAGCAC
AGGAATAAAT TGAATACTAT TAGTGGGTTA CTGCAAATGG GTGAATTGGA TGCCGTGCAG
CAACTGATTG GTCAAGAAAC TGAGCACTAC CAAGTGTTGA TTGAGTTTTT ACGTGAAACA
ATCAAAGACC CTCTGATTGC AGGGATGCTG CTTGGCAAAA CAGAGCGCGC TCGCGAGCTG
GGCTTGGAAC TCATGGTGGA AGACGGGGCA CGTTTAGAAA CGCTGCCGAT TCATATTAAA
GCGGAAGATG TGGTGACCAT TCTCGGTAAC CTGATCGATA ACGCGTTTGA AGCGACCTTA
ACCGCGATAC GTACGCTGTC GCCAGTTCCA CCGGAACGCA GAGTGATTGA GGTCTCGATC
AGTGATTTTG GTAACGAAAT CATTTTGGAA GTGGATGATC AAGGTTGCGG TTTACCTAAA
GAGCTGGAAC ATTGGCAGCT AACGGAAAAA GGGGTGTCGA GCAAAGCCGT GCAAAACCGA
GGGGTGGGGC TGTTTTTAGT CAAACAGCTT GCCGATCGTT ATCAAGGACA ACTGGACATG
CACAGCAAAG CGCAAGGTAC TCGAATGACA GTGTATTTAC CCAAGGATGA GTTGTAA
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| Protein sequence | MVWSSITFRK RMLIIMTLSG LIELLLLVAA GFMYVKHSQE QEVGQKALGV AAFLAQTPAV
INMIKTGRAS DDQQQSYREL TQLIGAAFIV IGDNQGIRLV HPIDERIGKP MVGGDNERAL
VEGEAYVSFA QGSLGKSVRG KAAVVDQHGQ IIGVVSVGYL IERLQDRVEP FLFYLIATAL
LVVGANALVS SYASRRFQRA ILGFEPEEIA RLYVELDVTM STLKEGIISI DDKGILRSIN
KSACEILGLR REQALNRRLT TILPESDLYT VLATGRTDHD IELYLNKHWI IANRSPIVVE
GKVVGAVSSF RLRDEINELT EQLAQTREYA EMLRSQTHEH RNKLNTISGL LQMGELDAVQ
QLIGQETEHY QVLIEFLRET IKDPLIAGML LGKTERAREL GLELMVEDGA RLETLPIHIK
AEDVVTILGN LIDNAFEATL TAIRTLSPVP PERRVIEVSI SDFGNEIILE VDDQGCGLPK
ELEHWQLTEK GVSSKAVQNR GVGLFLVKQL ADRYQGQLDM HSKAQGTRMT VYLPKDEL
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