Gene VC0395_A1199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1199 
Symbol 
ID5136706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1263369 
End bp1264802 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content49% 
IMG OID640532657 
Productputative multidrug transporter 
Protein accessionYP_001217145 
Protein GI147674445 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.467724 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCAGC CTGTAGATAG AAAAACCTTT TTGGGCATCT TTTTTACGGT TTTTTTGCCA 
ATGTTTTTGG CGGCCGTTGA TCAAACCTTG CTGGCTACCG CGACGCCTGC GATTGTGCGC
GATCTCGGCA ACTTGCAACT TTCTTCGTGG ATTGCGATTG GTTACATGCT GGCAAGTGCA
GCCAGTGTTC CGGTTTACGG CTGGTTAGGG GATCAGTATG GACGTAAACC GATGTTAATG
ATTGCGCTGA GTATTTTTGC CTTAGGTTCC GTCATTTGTG CTTTTGCAAT GAATATGCCG
TGGTTGGTGG CTGGTCGGAT TGTACAAGGA CTGGGTAGCG GCGGCTTAAT GAGCTTATCA
CAAGCCTTGA TCGGGGAATT AGTACCGCCC CGCGAGCGTG CCCGTTTTCA GGGCTATTTT
TCCTCACTTT TTGCGGTGGC CAGTATTGGG GGGCCAGTGT TAGGTGGTGT ATTGGTAACC
TACCTTTCTT GGCAATGGCT GTTTTGGTTT AACCTGCCGC TTGTGGGCAT CGCTTTGTAT
CGACTGGCAC GATTTCAATT TGTGCAAAGT TCGCGTAAGT CTGAGGCTTC AATTGATGTG
GCTGGGCTTA TCCTGTTTCC CAGTATGATG ACTCTCATCA TCTATTGGCT TTCGGCTGGC
GGGCACTATT TTCCGTGGTT CTCGGTCACC AGCATAAGCC TAGTGAGTGC ATTTGTTTTA
ACGAGCTTGC TGTTTATCGC CCAGCAAAAG CGAGTCACGG CTTCCTTTTT ACCACTCCGT
TTATTGGCGC GTCGTGAAAT ACATATTCCG TTGCTCTCCA CGTTCATTTT CGCGGCTTGT
TTGTTTGCGC TGATCTTCTT TTTACCGATT TTTTTACAGC TCGGCTTACG AGTTAACGCA
GCACAATCGG GACTACTGCT TATCCCCCTG TCATGCGGCA TTATTGGTGG CGCCTATACG
ACCGGTAAAG TGATTGCTAA AACAGGAGTG CCCAAATTTT TGCCTGTGTT TGGTATGAGT
TTAAGTAGCT GCGCCTTTGC TGTGTTGGCG ATGTTTTCAC TCTCTGCGCC CGTGGTGAGT
GCGATTGCTG CCTTATGTGG TTTAGGCTTA GGCACTGTGA TGCCCTCAAC CCAAGTTTTA
GTTCAAACAT TGGCAGGCAA AGCCAATTTA GGGCGGATCA CCGCGATGGC TTCACTGAGC
CGCTCGTTAG GGGCATCGGT CGGCACCGCT TTCTTTGGTA CATTGATTTA CTCCTTACTT
CCCGGTTTAT CGCCAAACAG TGGTTTGCAG GCGATTGCCG CATTGCCACA AAGTGAAATT
TTGCATGCTT TTCAAATTGG CTTTGCGGTT GCGGCGCTGC TTGCGTTGCT AGGGGCATTG
AATGCGTTGC GCGCTCCGAA AATTCAGTTG GATGATTACG CCTTTGACTC TTAA
 
Protein sequence
MSQPVDRKTF LGIFFTVFLP MFLAAVDQTL LATATPAIVR DLGNLQLSSW IAIGYMLASA 
ASVPVYGWLG DQYGRKPMLM IALSIFALGS VICAFAMNMP WLVAGRIVQG LGSGGLMSLS
QALIGELVPP RERARFQGYF SSLFAVASIG GPVLGGVLVT YLSWQWLFWF NLPLVGIALY
RLARFQFVQS SRKSEASIDV AGLILFPSMM TLIIYWLSAG GHYFPWFSVT SISLVSAFVL
TSLLFIAQQK RVTASFLPLR LLARREIHIP LLSTFIFAAC LFALIFFLPI FLQLGLRVNA
AQSGLLLIPL SCGIIGGAYT TGKVIAKTGV PKFLPVFGMS LSSCAFAVLA MFSLSAPVVS
AIAALCGLGL GTVMPSTQVL VQTLAGKANL GRITAMASLS RSLGASVGTA FFGTLIYSLL
PGLSPNSGLQ AIAALPQSEI LHAFQIGFAV AALLALLGAL NALRAPKIQL DDYAFDS