| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1194 |
|---|
| Symbol | |
|---|
| ID | 5137071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1257330 |
|---|
| End bp | 1258184 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640532652 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217140 |
|---|
| Protein GI | 147674015 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.603137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCACA TCCACCCCTA CCAAAATGAA TTGAGTGATA TTTTACGCAA ACAGCGCATT
ACCCCGTTAT TCCAACCCAT TGTGCACCTT GCGAGCGAGC GTGCTATAGG GTACGAGTCG
CTCAGTCGAG GCCCTCAACA AAGTCCTCTT CATACGGCGG GTTCTCTGTT TGAAGCGGCT
GAACAGTGCC AGCGCTTACC CGAGTTAGAG AAAATTTGTG TACACAAGGC GGCGGCAGCT
TGGTCAAGCT TCGGGATCGA TTCACAGCTT TTTATCAACC TGAGCCCAGA TATGTTGCTG
CATTCACAAC AACACCAGTG GGAATTACCA CAATTGATGC AGCGTCACCG TCTATCCGCC
AATCAGGTCG TGTTTGAAAT TTCTGAGCGC ACCCCTGCAT TGCAGTTGGA TGAGTTGAAA
AACTCGGTTC AACATCTACA AGCACAAGGA TTTTCAATAG CGATTGATGA TATGGGCTCT
GGGTATTCAG GATTAAAACT GTGGTCTGAA TTACAGCCGG ATTTTGTGAA AATTGATCGC
TACTTTATCC ATAACATTGA CAGTAACCCA ATCAAACTGA AATTTGTGCG TAGTTTGGTA
CAACTGGCAG AACAACTTGA TTGCCAATTA ATTGCAGAGG GAGTAGAAAC GCGCTCCGAA
CTTTTGGCCA TAGCGGATTT AGGTATCGAG TTAGTCCAAG GGTATTTATT CGGTCGCCCT
CAACTTACGC CTCAGCGAAT ATATCATTCG CAGAGTTTTT CCTCTGCCAC GGTCTTAAAC
ATCGAGTCAG CTCGTACAGA AACGCCTCTT CAGTACCTAA TGTTTCAAGA TACTCCACGT
ATGTCTGCGT TATAG
|
|---|
| Protein sequence | MNHIHPYQNE LSDILRKQRI TPLFQPIVHL ASERAIGYES LSRGPQQSPL HTAGSLFEAA
EQCQRLPELE KICVHKAAAA WSSFGIDSQL FINLSPDMLL HSQQHQWELP QLMQRHRLSA
NQVVFEISER TPALQLDELK NSVQHLQAQG FSIAIDDMGS GYSGLKLWSE LQPDFVKIDR
YFIHNIDSNP IKLKFVRSLV QLAEQLDCQL IAEGVETRSE LLAIADLGIE LVQGYLFGRP
QLTPQRIYHS QSFSSATVLN IESARTETPL QYLMFQDTPR MSAL
|
|---|
| |