Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1169 |
Symbol | |
ID | 5135587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1229320 |
End bp | 1230453 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640532627 |
Product | membrane-fusion protein |
Protein accession | YP_001217115 |
Protein GI | 147674153 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0146013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAAAAC GTTGGACACT TCTTGCAACC TTAGTAGGTG TTGGCTTGGC AGGTGGTTAT TACACTCTCA CTTATACCCC TGAGTCTTCA TCCCCATTAC CGACCCTCAA CGTCAGCCGG GGAACAATAG AGAAACAGGC GGTCGCGGTT GGTCAAATCA TGCCTTCACA TTCGGTGGCA ATTAAATCGC AAATCAACGG TATTGTCGGT GAAATTTATG TGCGTGAAGG GCAACATGTT GAGCAAGGAC AACCCTTGAT TAAGGTTCGT CCGAATCCAA CACCACAGGC GTTGACCGAT GCCTCCACAG AACTGATGCA AAGTGAAGCA AATCTTGAAT CAGACTTACA ACGCTTAGCC AACCTTGAGC GCTTAGTGAA ACAGCAAATC ATTCCTGCCA ATTATGATGA TTACGTCCGC GCGAAAGCCG ACGTCAAAGC TAAGCAAGCC GAAGTGCAGC AAAAACGCCA AAACCTAGAG TTGATCCGCA GCGGTGAAGC TTCGATTGGG CAAGCCAAGC TCTCCTCTAC TCTATATGCC CCGATCAGTG GCACGATTTT AAATATCAAA GTCGAGGTCG GAGAGCCGAT CATCTCTACC GAGTCGAGCC AAGCGGCAAC AGAAATGATC CAGTTAGCGG ATATGAAAAA TATCGTGTTT AAAGGCAGTG TCAGTGAACA TGATGCTGCG CAGCTGAATG CCGGCATGCC CGCCAGTATT ACCGTTGCCC CCTACCCTGA GCAGGTGATC AATGGTCAGT TGACCAAAGT CGCGATTCAA TCGGAGCGCT TAAATAATCC TGAAAACAAA GATGGCAAAA GTTTTGATAA CGGATTTCAA GTCGAAATCG GACAATTAGA CATCCCTGAA AACATGACAT TACGTTCTGG ATTCTCTGCC AGCGCAAAAA TCACCTTACA ACGTGCCGCG GATGTTATTA CCCTTCCGGA GCGCGCATTA CAGTTTGAGG GCGAAACGCC CATGGTGCTG ATTGCGGATG GCTCTGCACA AGGCTATACC GCTCATCCGG TCAAGCTTGG GCTTTCTGAC GGCGTACAGG TTGAGATCTT AGAAGGCGTA GCCGAAAAAG ACAGCATAGT GGATAACAGC ATGCTGGGAG GCCAGCATGA ATAA
|
Protein sequence | MAKRWTLLAT LVGVGLAGGY YTLTYTPESS SPLPTLNVSR GTIEKQAVAV GQIMPSHSVA IKSQINGIVG EIYVREGQHV EQGQPLIKVR PNPTPQALTD ASTELMQSEA NLESDLQRLA NLERLVKQQI IPANYDDYVR AKADVKAKQA EVQQKRQNLE LIRSGEASIG QAKLSSTLYA PISGTILNIK VEVGEPIIST ESSQAATEMI QLADMKNIVF KGSVSEHDAA QLNAGMPASI TVAPYPEQVI NGQLTKVAIQ SERLNNPENK DGKSFDNGFQ VEIGQLDIPE NMTLRSGFSA SAKITLQRAA DVITLPERAL QFEGETPMVL IADGSAQGYT AHPVKLGLSD GVQVEILEGV AEKDSIVDNS MLGGQHE
|
| |