Gene VC0395_A1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1142 
SymbolnlpC 
ID5135606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1203186 
End bp1203686 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content46% 
IMG OID640532600 
Productlipoprotein NlpC 
Protein accessionYP_001217088 
Protein GI147673576 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0142689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGACGG TCAAGCAAAC GTTTTCTCTG CTTATTCTAG GATTCCTTGT CGGGTGTACA 
GCCACTCCGC CTTCCGAGCC TGATACTTCT GTATCCGAAC CGAATTCGAG TAACCTACCA
TTGGCGAACT TTTCGAGTGT ATTCACAGAG TGGCGCGGCG TACCCTATCG TTTAGGCGGG
AATAGCAAAA ACGGCATTGA TTGTTCAGCT TTTGTACAAA TTGCTTACCG CGACGCATGG
CAACGAGATT TACCGCGCAC CACACAGTCT CAAGCGCAAA CGGGTCAGAA AATCGCATAT
GAACATGCTC AATATGGGGA TCTGGTATTT TTTAAGACAT CCCGCACCAA TATTCACGTC
GGTGTCTATT TAGGGGATAA GCAGTTTATG CACGCTTCAA CGTCGAAAGG CGTGATCATT
TCGAGAATGG ATAACCCTTA CTGGGCTTCA AAATTTTGGC ATTTTAGGCG GATTGAGAAT
CCGCCTTTGT TGTCAAACTA A
 
Protein sequence
MLTVKQTFSL LILGFLVGCT ATPPSEPDTS VSEPNSSNLP LANFSSVFTE WRGVPYRLGG 
NSKNGIDCSA FVQIAYRDAW QRDLPRTTQS QAQTGQKIAY EHAQYGDLVF FKTSRTNIHV
GVYLGDKQFM HASTSKGVII SRMDNPYWAS KFWHFRRIEN PPLLSN