Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1142 |
Symbol | nlpC |
ID | 5135606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1203186 |
End bp | 1203686 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640532600 |
Product | lipoprotein NlpC |
Protein accession | YP_001217088 |
Protein GI | 147673576 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0142689 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGACGG TCAAGCAAAC GTTTTCTCTG CTTATTCTAG GATTCCTTGT CGGGTGTACA GCCACTCCGC CTTCCGAGCC TGATACTTCT GTATCCGAAC CGAATTCGAG TAACCTACCA TTGGCGAACT TTTCGAGTGT ATTCACAGAG TGGCGCGGCG TACCCTATCG TTTAGGCGGG AATAGCAAAA ACGGCATTGA TTGTTCAGCT TTTGTACAAA TTGCTTACCG CGACGCATGG CAACGAGATT TACCGCGCAC CACACAGTCT CAAGCGCAAA CGGGTCAGAA AATCGCATAT GAACATGCTC AATATGGGGA TCTGGTATTT TTTAAGACAT CCCGCACCAA TATTCACGTC GGTGTCTATT TAGGGGATAA GCAGTTTATG CACGCTTCAA CGTCGAAAGG CGTGATCATT TCGAGAATGG ATAACCCTTA CTGGGCTTCA AAATTTTGGC ATTTTAGGCG GATTGAGAAT CCGCCTTTGT TGTCAAACTA A
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Protein sequence | MLTVKQTFSL LILGFLVGCT ATPPSEPDTS VSEPNSSNLP LANFSSVFTE WRGVPYRLGG NSKNGIDCSA FVQIAYRDAW QRDLPRTTQS QAQTGQKIAY EHAQYGDLVF FKTSRTNIHV GVYLGDKQFM HASTSKGVII SRMDNPYWAS KFWHFRRIEN PPLLSN
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