Gene VC0395_A1104 details

Gene Information

• Locus tag: VC0395_A1104
• Symbol: prc
• ID: 5137552
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1160197
• End bp: 1162194
• Gene Length: 1998 bp
• Protein Length: 665 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640532562
• Product: carboxy-terminal protease
• Protein accession: YP_001217050
• Protein GI: 147673268
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0793] Periplasmic protease
• TIGRFAM ID: [TIGR00225] C-terminal peptidase (prc); [TIGR01543] phage prohead protease, HK97 family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0000000153479
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATGCC GTTCAAAAAT ATCTCTGATT GCTGCTAGCC TATGGCTGGC AGCCTTTTCA 
GCTCAGGCTC TAGAAGCCAA ACTCAAACCA GAAGATCTCC CTCTTCTTGT TCCTGAAGCT 
CAACACGCAA CGGCAGCGAA ACGTGTTACC TCACGTTTTA CCCGTTCTCA TTACAAACAA 
TTCAATTTAG ACGACCAGTT TTCTCAAGCC ATGTTTGAAC GCTACCTTGA GATGCTAGAT 
TACAGTCGAA ATATCTTTAC TCAAGCGGAC ATAGACAGCT TCAAAGCTTG GTCTTTGCAA 
TTGGATGACC AATTAAAAGC AGGTGACAAT CAAATCGCTT ACGATCTGTA TAACCTGTCA 
ATGGAAAAAC GTTTTGAGCG CTTTCAATAC GCACTTTCTC TGCTTGATCA AGAGATGACG 
TTTGATGCTG ATGAGTCTAT TGAGCTTGAT CGCACGAAAT CGCCTTGGCC AAAAGATCTT 
AAAGAGATTA ACGAGCTGTG GAGACAACGA GTTAAATACG ATGCGTTAAG CTTGAAACTG 
GCAGGTAAAG AGTGGCCAGA AATCAAAGAA ACGCTCGATA AACGCTACAA CAATGCCATC 
AAGCGCCTCA CACAGACAAA AAGTGAAGAC GTATTTCAAA CTTATATGAA TGCGTTTGCT 
CGTGAAGTTG ATCCGCATAC CAGCTATTTG TCACCGCGTA ACGCAGAACA ATTCCAATCT 
GAAATGAATC TCTCGTTGGA AGGAATTGGT GCCGTGTTAC AAATGACCGA CGATTACACC 
ATCATCCGCT CATTGGTTGC AGGTGGTCCT GCAGCATTGA GCAAACAATT GGGTGAGGGT 
GACCGCATTA TCGGCGTCGG TCAAGAAGGC GAAGATGTGG TTGATGTAGT CGGTTGGCGA 
TTAGACGATG TCGTTCAACT GATTAAAGGA CCTAAAGGTA GCAAGGTGAA ACTGCTCGTG 
TTACCTGAAG GCAAAGACGC AAAAAGTCAC GTTGTCACTA TTGTGCGAGA TAAAATTCGC 
TTAGAAGATC GCGCCGTAAA ATCTGAAGTG ATTGAAAAAG CAGGGAAGAA AATTGGTGTA 
CTAGAAGTAC CGAGTTTCTA CGTTGGCTTA GCTCAAGACA CGGAAAAACT ACTGGCGGAG 
CTAAAAGCGA AAAAAGTCGA CGGCATTATT GTTGATTTAC GCAATAACGG TGGTGGTGCA 
TTAACCGAAG CTACCGCGCT TTCTGGTTTG TTCATTACCA GTGGCCCTGT AGTTCAGGTG 
CGTGATAGCT ATGGTCGAGT CAACGTTAAC TCGGATACCG ATGGTAGCAT TAGCTATAGC 
GGACCAATGA CCGTGCTGAT TAACCGCTAC AGTGCATCGG CTTCAGAAAT CTTTGCTGCC 
GCAATGCAAG ACTACGGCCG CGCGATCATT CTCGGTGAGA ACTCATTTGG TAAAGGTACC 
GTACAGCAGC ATCGCTCTCT CAATCATATC TATGATTTGT TTGATAAAGA GCTTGGCTAC 
GTACAATACA CGATTCAAAA ATTTTACCGT ATTGATGGTG GTAGTACCCA AAACAAAGGT 
GTCGTCCCTG ATATCGCGTA TCCCACCGCG ATTGACCCTT CCGAAACAGG GGAAAGTGTT 
GAAGATAACG CACTACCGTG GGACAGCATT GATGAAGCAA AATATGAGCG TTTGAATAAC 
TTCAACACCA TCATTGCTAG CTTGGAAGCT AAACACCAAC AACGTGTCGC GAATGATTTA 
GAATTTGGTT TTATCGAGCA AGATATTGCG AAATACCGTG CAGAGAAAGA TGACAACCTA 
CTTTCGCTGA ATGAAAAAGT ACGCAAAGAA GAGAGTGCTA AGGCTGATGA AGAGCGCTTA 
GCTCGCATCA ATCAACGCCA AAAAGCGTTA GGTAAATCGA CCTATGCGAG CTTGCAAGAT 
ATACCGAAAG ATTATGAAGC ACCGGATGCT TATCTCGATG AATCGGTTAA CATTATGCTT 
GACATGATAT CGCGATAA 

 

Protein sequence

MKCRSKISLI AASLWLAAFS AQALEAKLKP EDLPLLVPEA QHATAAKRVT SRFTRSHYKQ 
FNLDDQFSQA MFERYLEMLD YSRNIFTQAD IDSFKAWSLQ LDDQLKAGDN QIAYDLYNLS 
MEKRFERFQY ALSLLDQEMT FDADESIELD RTKSPWPKDL KEINELWRQR VKYDALSLKL 
AGKEWPEIKE TLDKRYNNAI KRLTQTKSED VFQTYMNAFA REVDPHTSYL SPRNAEQFQS 
EMNLSLEGIG AVLQMTDDYT IIRSLVAGGP AALSKQLGEG DRIIGVGQEG EDVVDVVGWR 
LDDVVQLIKG PKGSKVKLLV LPEGKDAKSH VVTIVRDKIR LEDRAVKSEV IEKAGKKIGV 
LEVPSFYVGL AQDTEKLLAE LKAKKVDGII VDLRNNGGGA LTEATALSGL FITSGPVVQV 
RDSYGRVNVN SDTDGSISYS GPMTVLINRY SASASEIFAA AMQDYGRAII LGENSFGKGT 
VQQHRSLNHI YDLFDKELGY VQYTIQKFYR IDGGSTQNKG VVPDIAYPTA IDPSETGESV 
EDNALPWDSI DEAKYERLNN FNTIIASLEA KHQQRVANDL EFGFIEQDIA KYRAEKDDNL 
LSLNEKVRKE ESAKADEERL ARINQRQKAL GKSTYASLQD IPKDYEAPDA YLDESVNIML 
DMISR