| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1036 |
|---|
| Symbol | potD-2 |
|---|
| ID | 5136642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1081457 |
|---|
| End bp | 1082557 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640532494 |
|---|
| Product | spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein |
|---|
| Protein accession | YP_001216982 |
|---|
| Protein GI | 147674149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000000359474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAG TCATTCTGTT TTTCTTTGCA ACGCCCAAAA GGGCAACGTT TAGTTTGGAG
CTAACGTCGA TGAAAAAACT GGCTACTCTT TTAGCAGGTA GCGCATGTGC GCTTTCTCTG
TTGTCTGGCA CAGCGGCAGC GGAAGATAAG GAACTGGTGT TTATGAACTG GGGACCGTAT
ATCAATAGCG GCATCCTAGA ACAGTTCACC AAGGAAACGG GAATCAAAGT GATTTACTCA
ACTTATGAGT CAAATGAAAC TTTGTATGCA AAACTCAAAA CGCACAATCA AGGTTATGAT
CTGGTAGTTC CTTCTACCTA CTTCGTGGCA AAAATGCGTG ATGAAGGGAT GCTGCAAAAG
ATTGACAAAT CTAAGCTGAG CAACTTCAAA AACCTAGATT CCAACTACCT AGATAAACCT
TACGACCCAA ACAACGACTA CTCAATTCCA CACGTTGTAG CAATTACCGG TCTCGCGGTT
AATACCGACA TGTATGATCC TAATGACTTC CAAAGCTGGG GCGACCTATG GAAGCCTGAG
TTAAAAGGTC AACTGATGTT GATGGATGAT ACGCGTGAAG TATTCCATAT CGCTCTGCGT
AAACTGGGTT ACTCAGGTAA CTCAACGGGC GACAAGCAGA TTGATGAAGC GTATGCAGAG
CTACAAAAGC TGATGCCAAA CGTACTGGTT TTCAACTCTG ATAACCCTGC AGCTCCTTAC
CTTTCAGGTG AAGTAGGTCT TGGTATGCTG TGGAACGGCT CAGCAGCAGC GGCGCAGAAA
GAAGGTTTAC CAATCAAGCT AGTCTTCCCG AAAGAAGGCG GTATCGGTTG GGTTGATAAC
TTCGCCATCT CATCTGGTGC CAAAAACGTC GATGCAGCAC ACAAGATGAT CGATTTCTTG
TTACGTCCTG AAATTGCAGA GCAAATTTCA CGCGACACAG GTTATCTGAC TGGCGTTAAA
GCCTCAAACG ACAAATTCCA AGATGTCGCG CCACTGTTCC CATCTCAAGA AGATCTGGAC
CGTGTTGAGT GGCAATCTGC CGTTGGCGAT AAGACAGTAA AGTATGAAGA GTACTTCATG
AAGTTGAAAG CTGGCCAATA A
|
|---|
| Protein sequence | MTEVILFFFA TPKRATFSLE LTSMKKLATL LAGSACALSL LSGTAAAEDK ELVFMNWGPY
INSGILEQFT KETGIKVIYS TYESNETLYA KLKTHNQGYD LVVPSTYFVA KMRDEGMLQK
IDKSKLSNFK NLDSNYLDKP YDPNNDYSIP HVVAITGLAV NTDMYDPNDF QSWGDLWKPE
LKGQLMLMDD TREVFHIALR KLGYSGNSTG DKQIDEAYAE LQKLMPNVLV FNSDNPAAPY
LSGEVGLGML WNGSAAAAQK EGLPIKLVFP KEGGIGWVDN FAISSGAKNV DAAHKMIDFL
LRPEIAEQIS RDTGYLTGVK ASNDKFQDVA PLFPSQEDLD RVEWQSAVGD KTVKYEEYFM
KLKAGQ
|
|---|
| |