| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1021 |
|---|
| Symbol | vceA |
|---|
| ID | 5137704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1061564 |
|---|
| End bp | 1062751 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532479 |
|---|
| Product | multidrug resistance protein VceA |
|---|
| Protein accession | YP_001216967 |
|---|
| Protein GI | 147673357 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA ATAATAGCAA CACCGAATTT GATGGTGTAC GCGCAGCTCA ATCGCGTAAA
AAAGGGTTTC TCGGATTAGC GGCCGCAATT GTGGTTGCCG GAGGGAGTTA TGCACTCTAT
TGGCACTTTA TCGGTTCACG CTACATTTCC ACCGACAACG CTTATGCTGC GGCGGAAATC
GCCGAAGTCA CGCCGGCCGT GGGCGGGATT ATCGCGCAAG TGAATGTAGT GGATACCGAG
TACGTCAAAC AAGGCGACGT ACTTGTACAG CTGGATGATA CCGATGCGAG ATTAGCTTTG
CTTCAAGCTG AGGCGGATTT GGCACTCGCA AAACGCCGTG TACGTAGCTA TCTCGCTAAT
GACGAAGGTT TAAGTGCTAT GGTGGAAGCA CAAGAAGCCA ATGAGCAGCG TGTGAAAGCG
CAGTTAAAAG CGGCGCAAGC GGACTTTGAA CGAGCAAAAA TCGATTTATC TCGTCGGGAA
GACTTAGTGC GTTCCGGCTC CGTTTCTGGT GAAGAGCTGA CGAATGCCAA AACCGGTTTT
GCGCAGGCAC AAGCAAACCT TAACGCGGCA AAAGCGGCTA TGGCGCAAGC ACAGGCAACT
AAGCTCTCGA CCATTGGCTC ACAAAAAGCT AATGCAGCGT TGACCGATAA CACGACCGTC
GATAGCAACC CTGAAGTCTT ACTGGCAAAA GCGCGTTATG AACAAGCGAA AATCGATCTC
GAGCGTACGG TGATTCGTGC GCCGATCAGT GGAATCGTCG CTAAACGCCA AGTACAAGTT
GGGCGTCGTG TACAGGTGGG GATGCCTTTA ATGACCGTGG TGCCTACTGA CCATATTTAT
GTCGATGCCA ATTTTAAAGA AGTGGAATTG CGCGATGTGA AAGTTGGACA ACCCGTTACC
TTAACGGCAG ATCTGTATGG TGATGATGTG ACCTACCATG GTGTGGTCGC TGGTTTTTCC
GGCGGTACGG GCTCCGCATT TTCGATGATC CCTGCACAAA ACGCCACAGG CAACTGGATT
AAAGTGGTGC AGCGTTTGCC GATCCGTATC GAGTTGGATC CCAAAGATTT GCAAGCCTAT
CCACTGCAGG TAGGATTATC TATGGTTGCC ACGATAGATA CTGCTGGAAC TACCGATCCA
CAAACCTTAG TGCAGTACCG CGCCGCCAAA GTATCAGAGC AAGGCTAA
|
|---|
| Protein sequence | MNSNNSNTEF DGVRAAQSRK KGFLGLAAAI VVAGGSYALY WHFIGSRYIS TDNAYAAAEI
AEVTPAVGGI IAQVNVVDTE YVKQGDVLVQ LDDTDARLAL LQAEADLALA KRRVRSYLAN
DEGLSAMVEA QEANEQRVKA QLKAAQADFE RAKIDLSRRE DLVRSGSVSG EELTNAKTGF
AQAQANLNAA KAAMAQAQAT KLSTIGSQKA NAALTDNTTV DSNPEVLLAK ARYEQAKIDL
ERTVIRAPIS GIVAKRQVQV GRRVQVGMPL MTVVPTDHIY VDANFKEVEL RDVKVGQPVT
LTADLYGDDV TYHGVVAGFS GGTGSAFSMI PAQNATGNWI KVVQRLPIRI ELDPKDLQAY
PLQVGLSMVA TIDTAGTTDP QTLVQYRAAK VSEQG
|
|---|
| |