| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0979 |
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| Symbol | |
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| ID | 5135545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1014629 |
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| End bp | 1016632 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532438 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216926 |
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| Protein GI | 147674102 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTATCA AGTTAATGAG GAATATATTT TCCGAACTAA CATCACATAT TCAGAACATG
AAACTCTATT TTAAACGCTC GTTGCTTGTC TTTAGCCTAA TGTCCTCATT CTGCGTCGCC
TCTGAACGAT CTGCATGGGA AGAGGTTTAC GCCAAATCTC AACACAAACA AACAGAGACG
GCCCTAAAAC TATTACAGGA TCGCTACCAT TCCCTTCCTG AAGGGGCAGA AAAACTCTAT
TTAACCTCTA AATTACACGG CTATTTCGTG CTCAAAGGGC AGCCCTATTA TGGTGAATTG
GTCAATTCCC ATGATACTTA CGCGCTGACA GAACAACGCT TCCTAGACGC GTTGAATCAT
GAAGAAAGTC TCGATTACCA CTCTGCAGAA GAAACCTACT TAACCTTCTA CGCCGAGATG
AAACAAAAAA ACGACCAAGA TGGCATGGTG CTATTTGAAT ACCATCTTTG TCGTCTTTTC
CAGCGGCATG GCCGCCCGTA CCAAGCTCGT TTCTATTGCT CACAGATGGA TCAGCGCCTT
CTTAATGCTG AAGATCCCCT ATTTCCTCGC TATCGCGGCC TACACCTCGT CGCCAATAAT
TTGGAGTTCT TAGGGGAATA TGAAGAGGCG CTGCAAACTT ACGATCTGCT ACTCAGTCTG
CTGCCTGATT ATGTCGACCC ATCCGGTATT TATAACGATG TCGGGCTTCT GATGGGGACA
TTAGGCCAGT ATGAATCGGC CTTGGACTAC CTCAATAAAG CATTGGAGTA TCGACTCGAA
CAAGGCAACC CACTACTTAT CGCGCAAGTA GAACACAGTT TGGGTGATAC TTACTTCAAG
CAAGGTCGAT ATGAAGAAAG CATCCTCTAT TTTGAACAAG CGAAAGCCCA TCTTACTCCC
GCTAATTATC TGTTTGGGTT GGCTTACGTG CACCTAGGTT TAGGCAAAGC GTACATTGAA
CTCAATAATT TCGTTGAAGG CGACCAACAT CTCTTTCAGG CTCTCGAGTA TGTCAATCAA
CATAAAGACC AACATTTGCA GGGACTGATT TACTTATCAC TTGCGCAAGC CCATTTCAAA
GAGCAGAAAT ACGCGCAAGC GATTGACTAT GCTAATCAAG CTGTCGCGAT TAGCGAGAGC
GCTTCTCTGC CACGCATTAA AGCGCAAGCT TATTTACAGT TAGCCAAAAT TGCGGAGGCT
GAGCAGCAAT ACCAAGAGGC ATTAAGCTGG TATCGCCAAT ATGCTGAGAG TGAGCTGTTG
CTGCGCAACA CAGAGCAGCG TAAAGCTTTT GAAGCGCTCG ATCTGGCGAA AGCGGAATTA
GAACAAAAAC GCGGCGTCAA TTTTTGGCGA GAAAACTACC AAGCGTTGGC CGAAAAATAT
GAAATGTTGA AGTGGCAACG TGTTTCACTT TCACTATTAG TGATTGTGTT TGCACTGATT
CTGCCCATTG CCCATTATCG TCGCAGAAAA GAGTGCGATC AGAATCAACA AGATAGCTTG
CATGGAGTAT TAAGCCGCAC CAGTGGATTA GAGCGATTAA CTCATATTGA AGCCTGCCAG
CAAACTGAGC ATGTCCATTT GCTTGCTCTA TTGGATATTG ACCAACTGAG GCAGTTCAAT
GAACGTCACG GCTATGAACG GGGCGATATT GCGTTACAAA ATACAATCAA TACCTTGCTG
CACCAGTTGC GTGCCAAGGA GTTTGTGTGT CGCTTAGGGG ATGATGAATT CTTGGTGGTT
ATGCCAAACT GCAGACGTAC TCTTTCGGAA ACACGGCTGT TTGTGCTTCA TCATGCGTTA
AATGGCAAAA CACCAACCGA TGCTAAATCA ACAGTTGGCT TGAGCGTTAC CCTCAGCTAT
TTAGCGGTAG AGAGTGGTTT GGCGAGTTTT ACGCACTTTT ATCCTAAGCT GGATAGCGCT
CTAAGCATCG CCAAACAGAG CGGCAATGGC GGCTTAATCG ATGCCGCCGA TCCCACTAAT
GCGCTGCTGA CTGCTTGCTC TTAA
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| Protein sequence | MFIKLMRNIF SELTSHIQNM KLYFKRSLLV FSLMSSFCVA SERSAWEEVY AKSQHKQTET
ALKLLQDRYH SLPEGAEKLY LTSKLHGYFV LKGQPYYGEL VNSHDTYALT EQRFLDALNH
EESLDYHSAE ETYLTFYAEM KQKNDQDGMV LFEYHLCRLF QRHGRPYQAR FYCSQMDQRL
LNAEDPLFPR YRGLHLVANN LEFLGEYEEA LQTYDLLLSL LPDYVDPSGI YNDVGLLMGT
LGQYESALDY LNKALEYRLE QGNPLLIAQV EHSLGDTYFK QGRYEESILY FEQAKAHLTP
ANYLFGLAYV HLGLGKAYIE LNNFVEGDQH LFQALEYVNQ HKDQHLQGLI YLSLAQAHFK
EQKYAQAIDY ANQAVAISES ASLPRIKAQA YLQLAKIAEA EQQYQEALSW YRQYAESELL
LRNTEQRKAF EALDLAKAEL EQKRGVNFWR ENYQALAEKY EMLKWQRVSL SLLVIVFALI
LPIAHYRRRK ECDQNQQDSL HGVLSRTSGL ERLTHIEACQ QTEHVHLLAL LDIDQLRQFN
ERHGYERGDI ALQNTINTLL HQLRAKEFVC RLGDDEFLVV MPNCRRTLSE TRLFVLHHAL
NGKTPTDAKS TVGLSVTLSY LAVESGLASF THFYPKLDSA LSIAKQSGNG GLIDAADPTN
ALLTACS
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