| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0929 |
|---|
| Symbol | |
|---|
| ID | 5135914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 951180 |
|---|
| End bp | 952058 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640532387 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001216875 |
|---|
| Protein GI | 147673345 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACAA TAAAATCTCC TTTACTCATT GCTATTCTTA GCTTGCTCGC CGCTATGATC
ACCATCCAAT CCGGAGCATC GATTGCGAAA CAGTTGTTTC CACTGGTCGG CCCGGGCGGT
ACCGTAGCGC TACGCATCAG CCTCTCTGCG CTGATTTTAA TGCTGATTTT CCGCCCTTGG
CGTGCACGCC TCAGCTGGCC ACAATGGCGC TCTATGTGCA TTTATGGTGC AAGTTTGGGT
GGGATGCAGC TGAGTTTTTA CTTCGCTATC GAACGTATTC CACTGGGTAT TGGGGTAGCG
TTAGAATTTT CAGGCCCACT GCTGCTCGCC TTACTCTCCT CTAAGCGTAA GAAAGATCTG
ATATGGGTTG CGTTGGCTAT TCTTGGTATT GTGTTCTTAT TACCGGATAT GAACGGCGTT
GATGCGTTAG ATCCAATTGG CGTTGCGCTC GCATTAATTG CTGGCGGTTT TTGGGCTGGC
TACATCTGGT TCGGACAACG TGCTGGCAGC GTAGGCTCAG GCGGTATGAC GGTTTCGATT
GGGATGCTGG TTGCCGCAGT CATCTATTTC CCAATCGCCA CTCAATTGGC CGAAGCCTCG
ATTTTTAGCT GGTCGATTCT GCCGATGGCA CTGCTGGTCG CCGTAATGTC GAGTGCCCTA
CCTTATAGCC TTGAGATGGT GGCACTCAGC CGACTCTCTA CACAGCATTT CAGTGTATTA
ATGAGCTTAG AGCCTGCGAT TGCCGCGATG GCGGGGTTAG CCATTTTGGG TGAAACTCTA
CAATGGAGCC AGTGGCTGGC GATTTTTATG ATCATTACTG CGTCCATGGG CTCTACCCTG
TCCGCGGCGA AATCACCGAC TAAAGTGACT CAAGAGTAA
|
|---|
| Protein sequence | MPTIKSPLLI AILSLLAAMI TIQSGASIAK QLFPLVGPGG TVALRISLSA LILMLIFRPW
RARLSWPQWR SMCIYGASLG GMQLSFYFAI ERIPLGIGVA LEFSGPLLLA LLSSKRKKDL
IWVALAILGI VFLLPDMNGV DALDPIGVAL ALIAGGFWAG YIWFGQRAGS VGSGGMTVSI
GMLVAAVIYF PIATQLAEAS IFSWSILPMA LLVAVMSSAL PYSLEMVALS RLSTQHFSVL
MSLEPAIAAM AGLAILGETL QWSQWLAIFM IITASMGSTL SAAKSPTKVT QE
|
|---|
| |