| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0918 |
|---|
| Symbol | sdaA-1 |
|---|
| ID | 5137719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 938480 |
|---|
| End bp | 939841 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532376 |
|---|
| Product | L-serine dehydratase 1 |
|---|
| Protein accession | YP_001216864 |
|---|
| Protein GI | 147675128 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000189103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTG TATTTGATAT CTATAAAATC GGTGTTGGTC CTTCAAGTTC ACACACGGTT
GGACCGATGA AAGCGGGTAA AGAGTTTATT GACGAACTAC GCTCAATGGG AAAATTGCGC
GACGTCACTA AAATCACCGT GGACGTTTAT GGATCGCTAT CACTGACAGG GAAAGGTCAC
CACACGGATA TCGCTATCAT CATGGGTCTG GCAGGCAATA CGCCAGAGAA AGTGGATATC
GACTCGATTC CGAGCTTTAT CGCTCGTGTA GAAGAAACAG AACGTCTTCC TGTTGGTATG
CACTGTCATA CCGTCTCTTT CCCTCGTGAA GGTGGGATGA ATTTCCACCG CACTAATCTG
CCTTTGCACG AAAACGGCAT GCAGATTCAC GCATGGATCA ACGACGAGAA AATCTTCAGC
AAAACTTACT ACTCTATCGG TGGTGGTTTC ATTGTTGATG AAGAGCACTT TGGTAAAGAG
AACGAATCTC TTATTCAAGT GCCTTACGCT TTCCGTTCAG CGGAAGAGCT GCTGAACCAA
TGTAAAGAGA GTGGCCTCTC GATCAGCACG CTCGTTATGG CGAACGAAAA AGCCATGCAT
TCTGACGAAG AAGTGCGCAC CTATTTCGCG AACATTTGGC GTACCATGCG TGAGTGTATG
GAACGCGGGA TGAACACCGA AGGCATCCTA CCTGGGCCTT TGCGTGTACC ACGCCGTGCG
GCAGCGCTGC GTCAACAACT GCTGACGTCC GAAAAAACCA CCAACGATCC AATGGCGGTG
GTTGACTGGG TAAACATGTA TGCGTTTGCG GTTAACGAAG AAAACGCAGC CGGTGGCCGT
GTAGTCACTG CACCGACTAA CGGTGCGTGT GGCATTATCC CTGCGGTACT CGCCTACTAC
GACAAATTCA TCCAAACCGT GACTGAGAAA GACTACATCC GTTACTTCGC TGCTTCTGGC
GCGATTGGTG GTTTGTACAA ACGTAATGCG TCTATCTCAG GTGCAGAAGT GGGCTGTCAA
GGTGAAGTCG GTGTCGCTTG TTCTATGGCA GCAGCGGGTC TTGCTGAGCT TTTAGGCGGT
AGCCCAGAGC AAGTCTGTAT GGCGGCTGAA ATCGCGATGG AGCATAACCT TGGTTTGACT
TGTGACCCTG TTGCAGGACA AGTACAGGTG CCATGTATCG AACGTAACGG CATTGCAGCG
GTGAAAGCGA TCAACTCAAC CCGTATGGCG CTGCGTCGTT CTTCTGCCCC ACGTGTTTCA
CTGGATAAAG TGATTGAAAC CATGCTGGAA ACCGGCAAGG ACATGAATGC TAAGTACCGT
GAAACCTCAC AAGGTGGCTT GGCGATCAAA GTGATCTGTT AA
|
|---|
| Protein sequence | MISVFDIYKI GVGPSSSHTV GPMKAGKEFI DELRSMGKLR DVTKITVDVY GSLSLTGKGH
HTDIAIIMGL AGNTPEKVDI DSIPSFIARV EETERLPVGM HCHTVSFPRE GGMNFHRTNL
PLHENGMQIH AWINDEKIFS KTYYSIGGGF IVDEEHFGKE NESLIQVPYA FRSAEELLNQ
CKESGLSIST LVMANEKAMH SDEEVRTYFA NIWRTMRECM ERGMNTEGIL PGPLRVPRRA
AALRQQLLTS EKTTNDPMAV VDWVNMYAFA VNEENAAGGR VVTAPTNGAC GIIPAVLAYY
DKFIQTVTEK DYIRYFAASG AIGGLYKRNA SISGAEVGCQ GEVGVACSMA AAGLAELLGG
SPEQVCMAAE IAMEHNLGLT CDPVAGQVQV PCIERNGIAA VKAINSTRMA LRRSSAPRVS
LDKVIETMLE TGKDMNAKYR ETSQGGLAIK VIC
|
|---|
| |