Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0907 |
Symbol | mdoD |
ID | 5135468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 923029 |
End bp | 924666 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640532365 |
Product | glucan biosynthesis protein D |
Protein accession | YP_001216853 |
Protein GI | 147675383 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000000201606 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCGTG TGTCCAGCGC CGTGCAACGT CATGCGCAAA AACTGATTGT ACTTTTCTCC CTGCTGTTTG GGGCTTCTTT GCTGATGTCT GATAATGGTT TTGCTACAGA CATTAAAAAT ACTAATGCCT CTTCTCCAGT GAATTCAGAG TCTACTAAGC CAACAAAAGC TGGCGAAGTT AAAAATGTGG TTCGCTTTGC CAAAACGGGA TCGTTTGATA ACGACACCGT TGTTCGCCTA GCTCGCCAAC TGGCGAAAAA GCCTTATGTT GCCTTAAAAG ATCCGCTACC AGAGAGTTTG GCCAATATCA GTTATGATGA GTACCGCGAT ATTCGTTTTA AACCCGACAG TGCAGTGTGG AAAGCAGATG GCCTACCATA TCAAATGCAA CTATTCCATC GCGGTTTCTT CTTCCAAGAT CTGATTGAAA TTGCACTTGT TGAAGGCAAC CAAGCCACTC ACCTAAGTTA CGACCCCAAT ATGTTCACCG CTGGCGAAGT TCTACAACAG AACCTGCCGA CTGAAGATAT TGGTTATAGT GGTCTTCGTG TGCATTACCC TCTCAACAGC CCATCCTATT TTGATGAACT GTTTGTATTC CAAGGAGCAA GCTACTTCCG TGCTCTGGGT AAAGGCAATG CGTATGGCTT GTCTGCGCGT GGCTTGGCCA TCAAAACTGC CGATCCAGCG GGTGAAGAGT TCCCTATTTT CCGTGCCTTC TGGGTGGAAA AACCAAACTA CGACACCAAC TTGATTGTGG TCCATGCCCT ACTGGATAGC CCAAGCGTGT CTGGTGCGTA TCGTTTCTCT ATTCGTCCAG GAGAAAATAC TCGTATGGAC GTTGAGGCGG TACTCTTCCC ACGCGTGGAG TTAAGCAAAG TTGGTCTAGC TCCGGCAACC AGTATGTTCA TGCATTCGCC AAATGGCCGT GAGAAGACCG ATGATTTCCG TCCTTCTGTG CATGATTCTG ATGGTTTATT GATGATCAAC GGACGTGGTG AACGTTTGTG GCGTCCATTG GCTAACCCTA GCACACTGCA AGTGAGCGCC TTTATGGACA ACTCACCGCA AGGCTTTGGT TTGATGCAGC GTGAGCGCGA TTACGCCAAC TACCAAGATT TGGAAGCCCA TTACGAAAAA CGTCCAAGTC TGTGGGTTGA ACCGGTCGGT AACTGGGGTC CTGGTGCTGT CGTGTTGACA GAAATTCCAA CTCAATCAGA AATTCACGAC AACATTGTCG CCTTCTGGAA GCCAGCACAA CCTCTTGCAG CAGGCAGTGA ATATCGTTTC TCTTATCACC TCAACTGGGG TGCGCAACCA GAAGCGAATC CACAAGCGAT CACTGTAAGC CGTACTGCGA GTGGACGTGC CGATATTGCC AAACCAACGC CAAAACGTTT GTTCGTGATT GATTACCAAG TCCAAGGTGC CAAGCCTGCA CAGATGCCAG AACCGAAAGT GCGCAGCAAT GCTGGGGTAA TCAGTAACGT TGTACTGCGT GATAACCCTG CCAATAATGG CTATCGCCTC TCATTTGAAT TTGATCCAGG CGAAGTGACG CTGGCTGAAC TACGGGCAGA GCTCACTTTG CAAGAAGCGC GTCCTGTAGA AACTTGGTTG TATCGTTGGA CCCTGTAG
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Protein sequence | MIRVSSAVQR HAQKLIVLFS LLFGASLLMS DNGFATDIKN TNASSPVNSE STKPTKAGEV KNVVRFAKTG SFDNDTVVRL ARQLAKKPYV ALKDPLPESL ANISYDEYRD IRFKPDSAVW KADGLPYQMQ LFHRGFFFQD LIEIALVEGN QATHLSYDPN MFTAGEVLQQ NLPTEDIGYS GLRVHYPLNS PSYFDELFVF QGASYFRALG KGNAYGLSAR GLAIKTADPA GEEFPIFRAF WVEKPNYDTN LIVVHALLDS PSVSGAYRFS IRPGENTRMD VEAVLFPRVE LSKVGLAPAT SMFMHSPNGR EKTDDFRPSV HDSDGLLMIN GRGERLWRPL ANPSTLQVSA FMDNSPQGFG LMQRERDYAN YQDLEAHYEK RPSLWVEPVG NWGPGAVVLT EIPTQSEIHD NIVAFWKPAQ PLAAGSEYRF SYHLNWGAQP EANPQAITVS RTASGRADIA KPTPKRLFVI DYQVQGAKPA QMPEPKVRSN AGVISNVVLR DNPANNGYRL SFEFDPGEVT LAELRAELTL QEARPVETWL YRWTL
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