Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0888 |
Symbol | |
ID | 5137138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 903224 |
End bp | 903772 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640532346 |
Product | putative lipoprotein |
Protein accession | YP_001216834 |
Protein GI | 147673878 |
COG category | [S] Function unknown |
COG ID | [COG3108] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00000101636 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAACAA CACGTCGAGA TTTCTTAAAA CTGACTGCGG GCGGATTAAT TTTAGCCGCC TGTACGCCCA GCATCGCGTT CGCGAGTTAT GCCGCCAAGC CAAGAGAATT GGCATTAAGC AACTTACATA CAGGCGAAAG CATTGAAACG CGCTATTTTA ATGGCAAAAA TTACGTTCGT TCTGAATTGA AACGGCTGAA TCATTTATGC CGTGATTTTC GTCGTGACGA AGTGCATGCC ATGGATAAGT TGCTGTTTGA TCAACTGTGC CAAATCCAAT TGCTACTTGG CACTCAAGCC GAGGTGCATA TTGTCTCTGG TTACCGCTCT CCCGCGACCA ACAAGCAGCT ACGCAGTAAA TCAAAAGGCG TGGCGAAGAA AAGTTACCAC ATGTCTGGGC AGGCCATCGA TTTCCGTTTG GATGGTGTGT CGCTAAAGAA AATCCGTGAA GCGGCGATCA GTTTGCAAGC GGGCGGTGTT GGTTACTATC CGAAAAGCCA ATTTATCCAC ATTGATACCG GCCCTGTACG CCAATGGGTC GGTGCCTAA
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Protein sequence | MQTTRRDFLK LTAGGLILAA CTPSIAFASY AAKPRELALS NLHTGESIET RYFNGKNYVR SELKRLNHLC RDFRRDEVHA MDKLLFDQLC QIQLLLGTQA EVHIVSGYRS PATNKQLRSK SKGVAKKSYH MSGQAIDFRL DGVSLKKIRE AAISLQAGGV GYYPKSQFIH IDTGPVRQWV GA
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