| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0879 |
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| Symbol | |
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| ID | 5137285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 892599 |
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| End bp | 893498 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640532337 |
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| Product | AraC/XylS family transcriptional regulator |
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| Protein accession | YP_001216825 |
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| Protein GI | 147674578 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000031891 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACCTT TAATTGAAAA TGTGATGAGC GGTATTAGTC AGGATTGGGT GCTGCGTGAA
TTTCGCAGCA AGAGCCAAAC TCAAGAATTT TCCTGTCCTT GGCACTACCA CACCGAATAT
GAATTAGTGC TCTACCAGAA CCCTGATCAG CGTTTTGTCG GTAACTATTT TGCAGGGGAT
GCGATTGGCG CGGTTGAGCA CAACACACTT TTACTTTACG GCCCCGGTTT ACCACATATG
ATTGCGGGTA GACAGCTGAT CAATAAAGCC CAAACTCTGC ACTCAACGAT TATCTGGTTC
AAACAAGAGT GGCTAGATAA GCTACAGAGC GTATTGCCTC AAGCTCAAGC TTTGCAACGC
TTGCAGCAAC ATGCCTCCTA TGGCGTGCGT CTCAGTGAGC AAACCGCTAC GCGCGTCGCC
GAACTCCTAG CCAATGTTGA TCAACAGCCT CACAGTTACC AATCTCTGCG CGTGATTGAG
TCCTTGCTTG TGATGGCGGA CGATGCGCAG GCACAGCGTC TATCTGTCGC ACCCTATGTG
ATGACGGCAC TCACCAGCAA CAGTGACACG CATAAGAAAA TTCAACTGGC CAAACAATAT
GTGGAGCAGC ACTACGCACA AGCAATAAAA ATTACCGACT TATGTCATCA GTTACATTTG
AGCGAAAGCT CGGCGTATCG CTTATTTGAA AAGCACTATG GGATGAGTTT TTCTGAGCAT
TTAAAGCAGT TTCGAATTGG TAAAGCGTGT GAGCTTTTAG CCAGTTCTGC GCTGCCGATT
GCATTAATTG CCGAGCGAAC TGGGTTTGGC AATTTGTCGA ACTTTAACCG CCAATTTAAA
ACCCTCAAAA CCATGACTCC GAGAGAGTTT CGCCAACGAT TTCAAGCAGT AAGTGGGTAG
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| Protein sequence | MRPLIENVMS GISQDWVLRE FRSKSQTQEF SCPWHYHTEY ELVLYQNPDQ RFVGNYFAGD
AIGAVEHNTL LLYGPGLPHM IAGRQLINKA QTLHSTIIWF KQEWLDKLQS VLPQAQALQR
LQQHASYGVR LSEQTATRVA ELLANVDQQP HSYQSLRVIE SLLVMADDAQ AQRLSVAPYV
MTALTSNSDT HKKIQLAKQY VEQHYAQAIK ITDLCHQLHL SESSAYRLFE KHYGMSFSEH
LKQFRIGKAC ELLASSALPI ALIAERTGFG NLSNFNRQFK TLKTMTPREF RQRFQAVSG
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