Gene VC0395_A0834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0834 
SymboluvrC 
ID5135122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp849689 
End bp851521 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content49% 
IMG OID640532292 
Productexcinuclease ABC subunit C 
Protein accessionYP_001216784 
Protein GI147674383 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.70037e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGACAC AGTTTGATTC TGCCCCTTTT CTTAAGACAG TCACCAACCA GCCCGGCGTA 
TACCGAATGT ATAACGCTGA GGCTGAAGTG ATTTATGTCG GCAAAGCCAA AGACCTCAAA
AAGCGTCTAA CCAGCTATTT TCGCAAGAAT CTCGACAGCG AAAAAACCAA AGCTCTCGTC
AGCAACATCG CCAAGATTGA CGTGACGGTC ACCCACACCG AAACGGAAGC ATTGATCCTT
GAGCACAATT ACATCAAGCA GTATCTGCCT AAGTACAACG TGCTGCTGCG TGATGATAAG
TCTTATCCCT ATATTTTCTT AAGCGCGCAC AAACACCCGC GACTGTCCTC ACATCGTGGT
GCCAAAAAAC GCCGTGGTGA ATATTTCGGG CCTTATCCGG ATTCGGGGGC AGTGCGTGAA
ACTCTGCATT TGATCCAGAA AATCTTTCCC GTCCGTCAGT GTGAAGATAC GGTGTACAGC
AACCGTACTC GACCTTGCTT GATGTATCAG ATTGGGCGCT GTGCCGGACC TTGTGTGAAA
GGACTGATTT CTGACCAAGG CTATCAAGAG ATCGTCCATT ACCTACGTCT TTTCCTGCAA
GGCAAAGACA ACCAAGTACT GTCGATTCTG GTTGAGAAAA TGGAGCAGGC GAGCCGTGAA
CTGCGTTTTG AAGATGCCGC TAAAGCGCGT GACCAAATTC AAGCCATTCG CCGCGTACAA
GAGCAGCAGT TTGTGTCGGA CGACAGTTTG GAAGACTTGG ATGTGCTCGG TTTTGCACAA
GAAAATGGCA TTGCTTGCAT CCATATTTTG ATGATCCGCC AAGGCAAAGT GCTCGGCAGT
CGTAGCCATT TTCCGAAAAT TCCAAGTGAC ACCTCGCAGG TCGAAGTGTT TGAGAGCTTT
TTAAGCCAAT ATTATTTAAG TCACAGTGAA GCTCGCAGTA TTCCGGCACG GATCATTTTA
AATCGAGGAT TGACCGAAGA AACCGAGGCG CTACAAATCG CGATCAGTGA ACTTGCAGGG
CGCAAAGTCA CTTTCCATGT CAATCCTACC GGCACGCGAG GTCGTTATCT GAAACTCGCC
AATACCAACG CGCTGACGGC GATCACGACT AAGATGAATC ACAAGATGAC CATCAGTCAG
CGCTTCAAAG CCCTGCAAGA AGAGCTCGGA ATGGATGCGA TTACCCGCAT GGAGTGTTTT
GATATCTCGC ATACCATGGG CGAAAGCACG ATGGCCTCTT GTGTGGTGTT TAACCAAGAA
GGGCCGCTAA AGCAAGAGTA TCGGCGTTAC AACATCACGG GCATCACTGG TGGGGATGAT
TACGCGGCGA TGGCGCAAGT GTTGGAGCGC CGTTACAGTA AGCAGCTTGA TAGCAGCAAA
ATTCCCGACA TTATTTTTAT TGATGGTGGG AAAGGGCAGC TTAATCGTGC GTACGAAATT
ATCTCCTCAT GTTGGCAGGA TTGGCCGAAG TACCCGAAGA TCATCGGCAT CGCCAAAGGG
GTGACACGTA AACCTGGTTT AGAAACGCTG ATCACTATTG ATGGTGATGA GTTTCATCTG
CCGAGTGATG CGCCTGCGTT GCACTTAATT CAACACATTC GGGATGAAAG CCATAACCAC
GCGATTGCAG GACACCGCGC GCAGCGCGGA AAAACTCGCC GTACCAGTAC ACTTGAGGGT
ATCGAAGGCG TCGGGCCGAA ACGGCGTCAA GCCTTGCTGA AATATCTGGG TGGTATGCAG
GAGTTAAAAC GCGCTTCTGT TGAAGAAATC GCCAAAGTGC CGGGCATCAG CCACGCATTG
GCAGAAAACA TTTATCAAGC ATTGAAACAA TAA
 
Protein sequence
MSTQFDSAPF LKTVTNQPGV YRMYNAEAEV IYVGKAKDLK KRLTSYFRKN LDSEKTKALV 
SNIAKIDVTV THTETEALIL EHNYIKQYLP KYNVLLRDDK SYPYIFLSAH KHPRLSSHRG
AKKRRGEYFG PYPDSGAVRE TLHLIQKIFP VRQCEDTVYS NRTRPCLMYQ IGRCAGPCVK
GLISDQGYQE IVHYLRLFLQ GKDNQVLSIL VEKMEQASRE LRFEDAAKAR DQIQAIRRVQ
EQQFVSDDSL EDLDVLGFAQ ENGIACIHIL MIRQGKVLGS RSHFPKIPSD TSQVEVFESF
LSQYYLSHSE ARSIPARIIL NRGLTEETEA LQIAISELAG RKVTFHVNPT GTRGRYLKLA
NTNALTAITT KMNHKMTISQ RFKALQEELG MDAITRMECF DISHTMGEST MASCVVFNQE
GPLKQEYRRY NITGITGGDD YAAMAQVLER RYSKQLDSSK IPDIIFIDGG KGQLNRAYEI
ISSCWQDWPK YPKIIGIAKG VTRKPGLETL ITIDGDEFHL PSDAPALHLI QHIRDESHNH
AIAGHRAQRG KTRRTSTLEG IEGVGPKRRQ ALLKYLGGMQ ELKRASVEEI AKVPGISHAL
AENIYQALKQ