Gene VC0395_A0834 details

Gene Information

• Locus tag: VC0395_A0834
• Symbol: uvrC
• ID: 5135122
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 849689
• End bp: 851521
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640532292
• Product: excinuclease ABC subunit C
• Protein accession: YP_001216784
• Protein GI: 147674383
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0000370037
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGACAC AGTTTGATTC TGCCCCTTTT CTTAAGACAG TCACCAACCA GCCCGGCGTA 
TACCGAATGT ATAACGCTGA GGCTGAAGTG ATTTATGTCG GCAAAGCCAA AGACCTCAAA 
AAGCGTCTAA CCAGCTATTT TCGCAAGAAT CTCGACAGCG AAAAAACCAA AGCTCTCGTC 
AGCAACATCG CCAAGATTGA CGTGACGGTC ACCCACACCG AAACGGAAGC ATTGATCCTT 
GAGCACAATT ACATCAAGCA GTATCTGCCT AAGTACAACG TGCTGCTGCG TGATGATAAG 
TCTTATCCCT ATATTTTCTT AAGCGCGCAC AAACACCCGC GACTGTCCTC ACATCGTGGT 
GCCAAAAAAC GCCGTGGTGA ATATTTCGGG CCTTATCCGG ATTCGGGGGC AGTGCGTGAA 
ACTCTGCATT TGATCCAGAA AATCTTTCCC GTCCGTCAGT GTGAAGATAC GGTGTACAGC 
AACCGTACTC GACCTTGCTT GATGTATCAG ATTGGGCGCT GTGCCGGACC TTGTGTGAAA 
GGACTGATTT CTGACCAAGG CTATCAAGAG ATCGTCCATT ACCTACGTCT TTTCCTGCAA 
GGCAAAGACA ACCAAGTACT GTCGATTCTG GTTGAGAAAA TGGAGCAGGC GAGCCGTGAA 
CTGCGTTTTG AAGATGCCGC TAAAGCGCGT GACCAAATTC AAGCCATTCG CCGCGTACAA 
GAGCAGCAGT TTGTGTCGGA CGACAGTTTG GAAGACTTGG ATGTGCTCGG TTTTGCACAA 
GAAAATGGCA TTGCTTGCAT CCATATTTTG ATGATCCGCC AAGGCAAAGT GCTCGGCAGT 
CGTAGCCATT TTCCGAAAAT TCCAAGTGAC ACCTCGCAGG TCGAAGTGTT TGAGAGCTTT 
TTAAGCCAAT ATTATTTAAG TCACAGTGAA GCTCGCAGTA TTCCGGCACG GATCATTTTA 
AATCGAGGAT TGACCGAAGA AACCGAGGCG CTACAAATCG CGATCAGTGA ACTTGCAGGG 
CGCAAAGTCA CTTTCCATGT CAATCCTACC GGCACGCGAG GTCGTTATCT GAAACTCGCC 
AATACCAACG CGCTGACGGC GATCACGACT AAGATGAATC ACAAGATGAC CATCAGTCAG 
CGCTTCAAAG CCCTGCAAGA AGAGCTCGGA ATGGATGCGA TTACCCGCAT GGAGTGTTTT 
GATATCTCGC ATACCATGGG CGAAAGCACG ATGGCCTCTT GTGTGGTGTT TAACCAAGAA 
GGGCCGCTAA AGCAAGAGTA TCGGCGTTAC AACATCACGG GCATCACTGG TGGGGATGAT 
TACGCGGCGA TGGCGCAAGT GTTGGAGCGC CGTTACAGTA AGCAGCTTGA TAGCAGCAAA 
ATTCCCGACA TTATTTTTAT TGATGGTGGG AAAGGGCAGC TTAATCGTGC GTACGAAATT 
ATCTCCTCAT GTTGGCAGGA TTGGCCGAAG TACCCGAAGA TCATCGGCAT CGCCAAAGGG 
GTGACACGTA AACCTGGTTT AGAAACGCTG ATCACTATTG ATGGTGATGA GTTTCATCTG 
CCGAGTGATG CGCCTGCGTT GCACTTAATT CAACACATTC GGGATGAAAG CCATAACCAC 
GCGATTGCAG GACACCGCGC GCAGCGCGGA AAAACTCGCC GTACCAGTAC ACTTGAGGGT 
ATCGAAGGCG TCGGGCCGAA ACGGCGTCAA GCCTTGCTGA AATATCTGGG TGGTATGCAG 
GAGTTAAAAC GCGCTTCTGT TGAAGAAATC GCCAAAGTGC CGGGCATCAG CCACGCATTG 
GCAGAAAACA TTTATCAAGC ATTGAAACAA TAA 

 

Protein sequence

MSTQFDSAPF LKTVTNQPGV YRMYNAEAEV IYVGKAKDLK KRLTSYFRKN LDSEKTKALV 
SNIAKIDVTV THTETEALIL EHNYIKQYLP KYNVLLRDDK SYPYIFLSAH KHPRLSSHRG 
AKKRRGEYFG PYPDSGAVRE TLHLIQKIFP VRQCEDTVYS NRTRPCLMYQ IGRCAGPCVK 
GLISDQGYQE IVHYLRLFLQ GKDNQVLSIL VEKMEQASRE LRFEDAAKAR DQIQAIRRVQ 
EQQFVSDDSL EDLDVLGFAQ ENGIACIHIL MIRQGKVLGS RSHFPKIPSD TSQVEVFESF 
LSQYYLSHSE ARSIPARIIL NRGLTEETEA LQIAISELAG RKVTFHVNPT GTRGRYLKLA 
NTNALTAITT KMNHKMTISQ RFKALQEELG MDAITRMECF DISHTMGEST MASCVVFNQE 
GPLKQEYRRY NITGITGGDD YAAMAQVLER RYSKQLDSSK IPDIIFIDGG KGQLNRAYEI 
ISSCWQDWPK YPKIIGIAKG VTRKPGLETL ITIDGDEFHL PSDAPALHLI QHIRDESHNH 
AIAGHRAQRG KTRRTSTLEG IEGVGPKRRQ ALLKYLGGMQ ELKRASVEEI AKVPGISHAL 
AENIYQALKQ