Gene VC0395_A0663 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0663 
Symbol 
ID5136771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp697290 
End bp697868 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content48% 
IMG OID640532121 
Productprotein gp16 
Protein accessionYP_001216613 
Protein GI147674118 
COG category[S] Function unknown 
COG ID[COG4382] Mu-like prophage protein gp16 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00000162215 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAAGC TCCTTAAACT TGTACAAATC GGTAAGCGCG AATTGCAACT CAGCGATGAA 
GCTTATCGAG ATTTGCTAGA GGAAGTCACA GGCCAGCGCA GTTCGCGCGG CCTGAACGAT 
TTCAAGCTCA GAAAAATGGT GGATAGAATG AAGTCGCTCG GCTTTGTTCC GCAAACCAAA 
AGCACGCAAC CACAGGCTAA GGCCACCAAG CCAAGAGCGT TAGAGGTCAC CAAGCTACGC 
GCAATTTGGA TTACCATGCA CAAGCAAGGC TTCGTGAAGA ACGGCAGTGA TGCAGCGTTG 
GATGCTTACG TAAAGCGCAT GACCAGTATC ACCAATGGCG GCAAAGGCAT TGAGCGTGCA 
GCGTGGCTGA AATCAGAAGA GGCTTATGTT GTGCTTGAGT CTCTAAAGCG TTGGCACTAC 
CGTTTGATGT CGGAGGCTAT TGTTGCGGCG GGTGGTCGCA TTCCATCTAA TGACAACTGC 
ACAGGCCCGG CGGGTTATGA TAAGTTGGCG TATTATTATC AGCATGATTT TATGCGTTGG 
TTAGAAAAGA AAAAGGAACA ACAAAATGAC TATATATGA
 
Protein sequence
MSKLLKLVQI GKRELQLSDE AYRDLLEEVT GQRSSRGLND FKLRKMVDRM KSLGFVPQTK 
STQPQAKATK PRALEVTKLR AIWITMHKQG FVKNGSDAAL DAYVKRMTSI TNGGKGIERA 
AWLKSEEAYV VLESLKRWHY RLMSEAIVAA GGRIPSNDNC TGPAGYDKLA YYYQHDFMRW 
LEKKKEQQND YI