Gene VC0395_A0612 details

Gene Information

• Locus tag: VC0395_A0612
• Symbol: oppD
• ID: 5137210
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 653057
• End bp: 654031
• Gene Length: 975 bp
• Protein Length: 324 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532070
• Product: oligopeptide transporter ATP-binding component
• Protein accession: YP_001216562
• Protein GI: 147674302
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGAGTT TATTAGATGT CAAAGATCTG CGCGTAGAAT TCTCTACCCA AGACGGTATT 
GTCACCGCAG TGAACGATCT CAATTTCTCT CTTAAGCAGG GAGAAACTTT AGGTATTGTG 
GGCGAATCCG GCTCAGGAAA ATCACAAACC GTATTTGCCA TCATGGGGCT ACTCGCCAAA 
AACGGCAAAA TCACCGGTAG CGCGAAATTT GAGGGTAAAG AAATCCTCAA CTTGCCAGAG 
CGTGAACTGA ATAAAGTGCG CGCCGAGCAA ATCGCGATGA TTTTTCAAGA CCCAATGACT 
TCACTTAATC CCTACATGAA AGTGAGCGAT CAGCTGATGG AAGTGCTGAT GCTGCATAAA 
GGTATGGGTA AAGCGGAGGC GTTTGAAGAG TCAGTACGCA TGCTGGAAGC GGTAAAGATC 
CCAGAAGCGC GTAAGCGTAT CACCATGTAT CCGCACGAGT TTTCTGGCGG TATGCGTCAA 
CGTGTGATGA TTGCGATGGC TTTGCTGTGT CGCCCGAAAC TGCTGATTGC CGATGAACCG 
ACCACCGCAC TCGACGTTAC TGTTCAAGCG CAAATCATGG AGCTGCTTAA CGAACTGAAA 
CGTGAGTTCA ATACCGCAAT CATCATGATC ACCCACGATC TGGGGGTGGT GGCTGGCTCT 
TGCGATAAAG TGCTGGTGAT GTATGCCGGC CGTACTATGG AGTACGGTTC AGTAAACGAT 
ATTTTCTACA ACCCAAGCCA CCCTTACGCA GAAGGTTTGC TGAGCGCGAT CCCGCGCTTG 
GATACCGAAG GGGAAGTGTT GCCGACGATT CCGGGCAACC CACCTAACTT GCTGCGTTTG 
CCTGTCGGCT GTCCTTATCA AGAACGCTGC CATCGCGTGA CGGATCGCTG TAAGCGAGAA 
GCTCCGCTCT TGCTGCCGTT TGGTAACGGT CGTCAACGTG CGTGTTTTTC TGATTGGGAG 
GCTTGGACAA AATGA 

 

Protein sequence

MMSLLDVKDL RVEFSTQDGI VTAVNDLNFS LKQGETLGIV GESGSGKSQT VFAIMGLLAK 
NGKITGSAKF EGKEILNLPE RELNKVRAEQ IAMIFQDPMT SLNPYMKVSD QLMEVLMLHK 
GMGKAEAFEE SVRMLEAVKI PEARKRITMY PHEFSGGMRQ RVMIAMALLC RPKLLIADEP 
TTALDVTVQA QIMELLNELK REFNTAIIMI THDLGVVAGS CDKVLVMYAG RTMEYGSVND 
IFYNPSHPYA EGLLSAIPRL DTEGEVLPTI PGNPPNLLRL PVGCPYQERC HRVTDRCKRE 
APLLLPFGNG RQRACFSDWE AWTK