| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0557 |
|---|
| Symbol | asmA |
|---|
| ID | 5136650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 597287 |
|---|
| End bp | 599398 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640532015 |
|---|
| Product | asmA protein |
|---|
| Protein accession | YP_001216507 |
|---|
| Protein GI | 147674400 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00432882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TGTTTATTTC TCTTCTCGGT TTAGTTGTGC TGATTGTTGG CGCACTGCTG
GCCTTAGTGT TGTTGGTTAA CCCCAACCAA TTTAAACCTT TAATCGTAGA GCAAGCCAAA
AAACAAACTG GCTTAGATTT GGTGATTGAA GGCGATATTG GCTGGCAATT TTTCCCATCT
ATCGGTTTTG AGTTAGGCAA AACCGAGCTG AAAAACCCGC AAGGTTTTGC TAGCCCAAAC
CTGTTTAAAG TTGAGAGTGT GGGTATTGAT GTCTCAGTGA TGCCACTGCT CGATAAACAG
CTCAAAATCG GCAACATCCG TTTGGATGGC GCAGAGTTCC ATCTGGAAAC GCTTAAAGAT
GGTCGCTCCA ATTTGGATGC CTTGACGCAA GCGCAATCTA AACCCGCGTC CGCGCCAGCG
ACAACCGACT CTGCACCCGC TTCTCAGCCA AGCTCAAGCG AGCCAGCCGC GGCGTGGAGT
ATTGAATTAG GGGGCGTGTC TGTCTCCAAT GCGGTGTTGG AAATAACGGA TAAAAAAGCG
GGTTCGCATA CCAAGCTGTA TGACGTTCAA CTGAGCGTTG CTGAGTTTGT GCCAGACAGC
TGGACGAAAG CGACCTTTGC CGCGAAAGGC GATAAAGATC AGCAAAAGTT TGCCGCGCAA
GGTGAAGCGG AAGTGCGCCT ATCGGCGGAT TTCAAGCAGT ATGCGCTGCG TGACATTAAG
CTTGATGCGA GCTTTAGTGA TCCGAGTAAC CAAATCGATT CAGTCAAACT GAAACTCGAC
ACCTTTGAGT TTGATAAAGC CAATGCGCTG ACCTTCTCTG TGGCGGGTAA AGCGGCAGAC
ATGAAGCTTA ATGCGCAAGG TTCTGCCTCA TTGATGGTCA ATCAAGCGAT GAGCAAAGTG
GGTTTGGATG CGCTGAAACT GCAAGCCGAA CTGGAAGGGG CTGCGTTACC GCAATCACCG
ATGAAGTTAA GTTTAGACTC TCAAATTGCT TTCGATTTGA CACAAAACCA TCTCAGTGTG
CTGCTCAACA AACTAACGGC TAATGCGCTA AGTTTCGATG GCAAAGCGGA TGTCACTCTC
GCAGATATTC CGAAAGTGCG TTTCAACTTG CACAGCCCTG AGATTGACTT GGATGCCTTC
TTAGGCACGA AAGCTCAAGA GTCGCAACCT GCGCCAGCCA AGGAAGCAGC GGCATCCTCA
GCGTCAGCAC CCGTGACAAA TGCCCCAGCA GAAGTGGAAC CGGACTTGTC GGCACTCAAC
GCCTTGGATG TGGCCGGTGA GATCAGCATT GATAAATTCA AAGCCAGCAA CGCCCATCTG
CAAAATGTAA AAGCGAATTT TGCGGTCAAT CGTGGCGTGG TGGATTTGAA ATCCTTCACC
GCGAATCTGT ATCAAGGATC CGTGCAAGCT AGCGCGCAAG TGGATGCGCG TAAAACGCCC
GCGACTTACA GTGTGAAGAA GCAGATCAAA GGGGTACAGG TTAAGCCTTT ACTAAAAGAT
GTGCTGAACA ACGAAATGCT AGAAGGGACA GGCAATATTG ATATGAATGT GCAAGGCCAG
AGCCTAACAC CAAGCGGCAT CCAGAAAAAT CTGGTTGGTA CTGTGGCGAT TAACTTTGCC
GATGGTGCGG TGAAGGGCAT TAACGTGGCG CACTTGATTC GTACCCACTA CGCCAAGATC
AAAGGCCAAA ATGTTGAAGA AGCGGATGCG GTAAAGAAAA CCGACTTTAG TGCGATGACG
ACGACGCTGA AACTCAATAA AGGTGAAGTA ACGACCAACG ATCTTAATAT GCAATCGCCA
TTGCTGCGCA TTCATGGTGA AGGTAAAGCC AATTACCTAC AGCAGAATGT CGATTTTCTG
GTGCGTACTT CGATTGTTGG AACCTTGGAA GGTCAGGGCG GTAAGAGTTT AGATGAGCTG
CGCGATGTGA CTATCCCGAT CAATATTTCA GGTGCGTGGA GCGATCCGAA GTTCCGTTTG
GTGTTTGATG ATGTACTCAA ACAAAAAGCC AAGAAAGAAG TGGATCGCGG CGTGGAAAAA
CTGACCGATA AAATCAAAGA TGAAGACACC AAAAAAGCGG TGGATGGGTT GCTAAAAGGT
CTATTTAACT GA
|
|---|
| Protein sequence | MKKLFISLLG LVVLIVGALL ALVLLVNPNQ FKPLIVEQAK KQTGLDLVIE GDIGWQFFPS
IGFELGKTEL KNPQGFASPN LFKVESVGID VSVMPLLDKQ LKIGNIRLDG AEFHLETLKD
GRSNLDALTQ AQSKPASAPA TTDSAPASQP SSSEPAAAWS IELGGVSVSN AVLEITDKKA
GSHTKLYDVQ LSVAEFVPDS WTKATFAAKG DKDQQKFAAQ GEAEVRLSAD FKQYALRDIK
LDASFSDPSN QIDSVKLKLD TFEFDKANAL TFSVAGKAAD MKLNAQGSAS LMVNQAMSKV
GLDALKLQAE LEGAALPQSP MKLSLDSQIA FDLTQNHLSV LLNKLTANAL SFDGKADVTL
ADIPKVRFNL HSPEIDLDAF LGTKAQESQP APAKEAAASS ASAPVTNAPA EVEPDLSALN
ALDVAGEISI DKFKASNAHL QNVKANFAVN RGVVDLKSFT ANLYQGSVQA SAQVDARKTP
ATYSVKKQIK GVQVKPLLKD VLNNEMLEGT GNIDMNVQGQ SLTPSGIQKN LVGTVAINFA
DGAVKGINVA HLIRTHYAKI KGQNVEEADA VKKTDFSAMT TTLKLNKGEV TTNDLNMQSP
LLRIHGEGKA NYLQQNVDFL VRTSIVGTLE GQGGKSLDEL RDVTIPINIS GAWSDPKFRL
VFDDVLKQKA KKEVDRGVEK LTDKIKDEDT KKAVDGLLKG LFN
|
|---|
| |