| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0535 |
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| Symbol | rnfD |
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| ID | 5137154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 573097 |
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| End bp | 574143 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640531993 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001216486 |
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| Protein GI | 147674988 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00000134913 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCTTCT TTATTGCTAG CTCCCCACAT TTACGCAGTA AGCGCAGCAC GGCTGACGTT
ATGCGTTGGG TATTAGTCTG CGCACTGCCC GGCCTGATCG CTCAGACTTA CTTTTTTGGC
TACGGCACAC TGATCCAGTT ACTGCTGGCC ATCTCGGTCG CAGTGGCACT CGAAGCGGGC
ATTATGCTGC TGCGTAAACG ATCACCAATC TCAGCACTGC GCGATTACAG CGCGGTGGTT
ACCGCATGGT TACTCGCGGT CGCTATCCCG CCCCTCTCAC CATGGTGGGT CGTCGTGATC
GGTCTGATTT TTGCGATCGT GATTGCCAAA CATTTGTATG GTGGACTTGG GCAAAACCCT
TTTAACCCAG CGATGATCGC CTACGTAGTG TTGTTGATCT CCTTTCCGGT TCAGATGACC
AGTTGGATGG CGCCCATCAA ATTAACCGCC GAACCCAGCT CACTGGTAGA CTCGTTCTCA
CTGATCTTCG GCGGTTTTGA CAGTGATGGT CTATCGCTAC AGCAAATCCG TACGGGCATC
GATGGCATTA CCATGGCAAC CCCGCTCGAT GCGATCAAGA CCTCGCTCAA AGCAGGACAC
ACCATGAGTG AAACCTTGAC CCAGCCTCAG TTTAGTGGCT TTGCGGGTAT CGGTTGGGAA
TGGGTCAATA TTGCCTATCT ACTCGGTGGC CTGATTCTGC TGAAACTGCG TATTATCCGT
TGGCACATTC CAGTGGCAAT GCTGGCAGGT TTGGTTTTCA CAGCGTTACT GGCACAACTT
TTTGCACCGG GAACAACCGC GTCCCCCATG ATCCACCTAC TCTCGGGCGC AACCATGCTG
GGCGCATTTT TTATCGCGAC CGATCCGGTC AGCGCCAGCA CGACGGATAA AGGCCGCTTG
ATTTACGGTT TCTTCATCGG TGCAATGGTG TTTCTGATCC GTAGTTGGGG CGGCTTCCCT
GATGGTGTCG CCTTTGCCGT ACTGCTCGCC AACATGTGCG TACCGCTGAT TGACTACTAC
ACCAAACCGA GAACTTACGG ACACTAA
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| Protein sequence | MAFFIASSPH LRSKRSTADV MRWVLVCALP GLIAQTYFFG YGTLIQLLLA ISVAVALEAG
IMLLRKRSPI SALRDYSAVV TAWLLAVAIP PLSPWWVVVI GLIFAIVIAK HLYGGLGQNP
FNPAMIAYVV LLISFPVQMT SWMAPIKLTA EPSSLVDSFS LIFGGFDSDG LSLQQIRTGI
DGITMATPLD AIKTSLKAGH TMSETLTQPQ FSGFAGIGWE WVNIAYLLGG LILLKLRIIR
WHIPVAMLAG LVFTALLAQL FAPGTTASPM IHLLSGATML GAFFIATDPV SASTTDKGRL
IYGFFIGAMV FLIRSWGGFP DGVAFAVLLA NMCVPLIDYY TKPRTYGH
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