| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0519 |
|---|
| Symbol | |
|---|
| ID | 5136200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 555714 |
|---|
| End bp | 560579 |
|---|
| Gene Length | 4866 bp |
|---|
| Protein Length | 1621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640531976 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001216469 |
|---|
| Protein GI | 147673505 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATCCGA TATATTTAAC CAATCTCCGT ACTTCAAAAT TCAAAGCACA TACTGAGCCT
TTTATGCGTC GATTTTTCCA ACGGCTCCTG CTGCCAGTGG CAGTAATGGT CGTGACTCAG
ACTTCTTTCG TCAGTGCAGA AAGCATTCGT CTTGTTGGCC CTGATGGCCA AGTACAACCT
ACGCCCCAAT ATAGTGAAAA TATTGTTCGC AATTCGGCTA ATAATGAACC CGGTCGATTT
TTCGGGCCGA CCTCAGCCAA CCAGACTTTG TGGTCGATAG CCAGCCAGTT ACGGCCTTCT
TCCAGCGTCA CGGTGCAACA AACGTTATTG GCCATTTATC AGCTCAATCC TCAGGCGTTT
GAAAATCAGA ATATTCACAC TCTGATCCCA GGTAGTACTC TACGTGTTCC GTCACTGGCA
CAAATCAGTC GCAATAGTAC TCAAGACGCT GTCAACATCA TGGCGTCTCA CCAAGCAAAA
TTAAACCAAA CACCCGATAC GCCAGTGAGG CCTGTAGCTC CTCCACGTCC TGCTCCTGTT
GCAACGCCAA AAGTAGAAGC GGTCGCGCAA ACGCCACCTC AAGTCACCCC TACGACCGCG
CCGCAAGAGA AAGCGCCTAC TGAGCTCAAG ACGCCCGCTA AACCCAGCCA ATCAACAGAT
GCTGAAGTGA TGGCTCTGGA AGAGAAGAAT CACACCTTGC GCTTGATGCT TTCGCAAGTG
CAATCGGAAG TCAGTACTCT CAAAGAAGAG CTGGGTGATG AGAACCGCAT CCGCAGTGAA
GTCGAGAGAT TGTTGGAAGA AGAGCGCCGT AAAGCGGAAG AAGCTTCGCG TCTTGCGCCA
TCAGCTTTAG ATAATTTGCT TTCTAATGGC TGGTTAGTGG CATTGTTAGC GCTAATCCCC
GGTCTGCTTA TTGCTATCGT GGTGCTTCTG CTGCTTAACC GCCGCTCAAG TGCTCAGCAA
GAGAATCCAA CGCAAAACAA TATCACTTCT GAAATGCCAA CCGCGGCGCC TGTCACTTTA
GGTCCAGAAC AGACGGAAGA TATTGGTGAT GACCTGCTGT TGGATGATGA CCTCTTCAGT
ACCACCGACG ACAAAGAAGA AAATGACGCT GAAAAAGCGT TCTCGGATGA AGATGATGTC
TTCGCCGATC TGAACGAAAC CGATCTTGAT TTCAATCTTG ATGGACAGGA CAGCGATGAT
CTGTTTGTAG GAATTGATGA TGATGGCGAT CTCGATACCG AATTTGATGC TCTAAATGAA
AGTGCCAACG GCATTTCTGT TAACGCTGAT GATAAAGCGC TCGGACTTGA GGAGATGGAG
CGCGCGCTAA ATGATGTTAG TGAACCAACC GACAACGATG ATCTGAATTC TTTTGACTTG
GCTGATGAAA ATCAAATGTC GGAGGATGAC ATCGAAGCGC TGTTATCCGG TGATGAAGAG
AATGAGCTGC TTAGCGATGG CAAAGTGGAT CAATCGCTGC TGGATGACTT ACTCGCCAGT
GAACTCGACG CATTAGATGA TGAACCCGCG ATCCAAGATA CCGAAACCTT GGATACGCTA
CTCAATGATG AGCTGGCGTC GCTCAGTGAA GAGGATGATG ACGAATTTGA TCTCAGTGGT
GCAGGCGTAG CGGGTGACCA AGATTTGGAT GACCTGTTTG CCTCTATCGA AGAGCAAGCT
GACCTTGAGC AACTTGAAGC CAAAGCGATA GATGAAACGG CATTACTTGA TGAAATACTC
GCTGAACAAG ATGCTCCTCT GAGCGAAGAG AGTACCGAGC TTTTAGATGA GTTGTTGGAT
GATTTTGATA AGCCAGAAAA CGATGAGTTT GATGCCCAAA CTGCGGATCT TCTTCAACCC
GAAGAGCCCA TTTTAGATTT AGAGGAAGAT AGCACTCAGT TACTCAATGA GGTGTTGGGG
GAACCCGTGC CCGAAGAGCT TGCCTCTGGG CTTGAAATTG ACCAAAACAG CACTGAGCTT
TTGGATGAAT TACTGGATGA TCTGGACTTG GATGATGAAT CCATCGAAGC TACAGAATTC
TCAGTGGCAC CGGAAAAACT CAGTGTAGAA GATGGTACTG AGCTTTTTGA TGAGTTGCTT
GAAATTGAGC AGCATCCAGA GTCAGCAGAA TCACTCCCGG AGTTGGCAAC CGAAGATGAG
TTTAATAGCG ATACCTTCAT TGACGACTTA CTCAACTCGG CACCCGCAAA AGATCCGTTA
CTTGAACCTG TACTCGATGA AAATGAAGCT TTCGCACAAG CGGATGATTT TGATTTCAAT
CCTGAAATTG AAGGTGGTCT GGAAGACGAT TTATCGCAGC CAAGTGCGCT ACCCGCCAAT
GAGTTTGGTA CTCCTCAAGA TGAGGATTGG GTATTTGATG AGGATGACTC CTCACCAACT
TTAGAGGGTA ATGCTGAGCT TGAGCTATCT TCGGCTGAGG ATGATTTGCC AGAGCAGACT
ACCGCCACAA ATGAAACGGC GGATGAATTA CTGGCAGATT TGGCTGCGCA GCCGCAATCA
AATACAGTGG ATACGTCTGA TGATGCGTTA GCCCCTGACG GGCTTTCTCA GTCTGTCGAG
GAGCCTCTCA CTCTTAACGA TTTGGAGCTG CCAGAAGAGA ATGATGAGCC TCAATTGGCT
GAAGTCACTC CGTCTTCTGC ATTCGACGAA CAACAAGTTG AGACCGAAAT TGAGCCTGAG
TCGGAGCCGT TGGCTGCAGA AGCATCTAAT GATGAAAGTG ACCTTACTGC GCTTAATGAA
CTCGATTTAC CCGAGTACAC CGAAGAAGAT GTCTTGGCAG ATGTGCAGTT AGAGCCCGCC
GCAGAATCGG AAGTTGAGCC AGATCTTGAG TTAGTAAATG AGCCAGTCAC GGAGGAAGCC
TTTACCGAGC TTGATGAGCT CGATTTGCCT GAGTACACCG AAGAAGATGC CTTGGCGGAT
GCGCAGTTAG AGCCTGTCGC AGAATCGGAA GTTGAACCCG AGCTTGATCT GGCAAGTGAG
CCAGCCGAGG AAGAAGCCTT TACCGAGCTT AATAAGCTCG ATTTACCTGA GTACACCGAA
GAAGATGCCT TGGCGGATGC ACAGTTAGAG TCCGCCACAG AATCGGAAGT TGAGTCAGAG
CTTGAGTTAG TAAGTGAGCC AGCTGCGGAA GAAGCCTTTA CCGAGCTTGA TGAGCTCGAT
TTACCTGAGT ATACAGAAGA AGACGCCTTG GCGGATTCGC AGTTAGAGCC CGCCGCCGAA
TCGGAAGTTG AGCCAGAGCT TGAGTTAGTA AGTGAGCCAG TCACGGAGGA AGCCTTTACC
GAGCTTGATG AACTCGATTT GCCTGAGTAC ACCGAAGAAG ATGCCTTGGC GGATGCGCAG
TTAGAGCCTG CCGTAGAATC GGAAGTTGAG CCAGAGCTTG AGCTAGCAAG TGAGCCTGCT
GAGGAAGAAG CCTCTACCGA GCTTAATGAG CTTGATTTGC CCGAGTACAC CGAAGAAGAT
GCCTTGGCGG ATGCGCAGTT AGAGCCTGCC GCAGAATCGG AAGTTGAGTC CGAGCTTGAG
CTGGCAAGCG ATCTCGAAGA GGAAGAACCC TTTACCGAGC TTAATGAGCT CGATTTGCCT
GAGTACACCG AAGAAGACGC TTTGGCAGAT GCACAGTTAG AGCCTGCCGT CGAATCTGAA
GTTGAGCCAG AGCTTGAGCT GGCAACTGAG CCAGCCGAGG AAGAAGCCTT CCCCGAGCTT
GATGAGCTCG ATTTGCCTGA GTACACCGAA GAAGACGCTT TGGCGGATGC GCAGTTAGAG
CCTGCCGCCG AAGCGGAAGT TGAGCCAGAG CTTGAGCTGG CAAGCGATCT CGAAGAGAAA
GAAACCTTTA CTGAGCTTGA TGAGCTCGAT TTGCCTGAGT ACACCGAAGA AGACGCCTTG
GCGGATGCGC AGTTAGAGCC TGCCGCCGAA TCAGAAGTTG AGCCGGAGCT TGAGTTGGCA
AGCGTTCTCG AAGAGGAAGA CTCCTTTACT GAGCTTGATG AGCTCGATTT GCCTGAGTAC
ACTGAAAAAG ACGCCTTGGC GGATGCACAG TTAGAGCCTG CCGCTGAATC GGAAGTTGAG
CCAGAGCTCG GTGATGAGAC AGAAACGCTA GCACAAGAGA CAGAAAGTGA TGCGCTGGTT
GCCGATGAGG ATTTACTGGC CAGTGTTGAA AGCGCAGTAG ACGAGGTTCA GCCTGAACTT
TTGGGCGCGA CTCAAGATGT GCCACCGACA CAATCTTTGG CTAACAAGGC ATTTGATGAA
GAAGCGCTGC ACGATTGGCT GAGTGATAAT CCCGATGGTG AAAAACCGTT TAGCTTTGAT
CGTCCACTTG ATGCTAAAAC GATTGATAGC GCGGGCATGG ATATTGATGC CATGTTGCAA
ATGGGCGGCG AAGATTGGAA TGGTTTCCAC CTAACCCCAG ATCAGCAAGC GCAGTTGCCG
GATGATGTAC CTGAGGATGA GCAAGCGATT TGGGCGAGTG AAACACCGGA GCCGCAAGCG
AAGCCTGAAA ACTGGGGATC GCAAGAGGAT TTGCTGGATT TCGACCCACA GCGTGATGGC
TACATGACCA TCGACGAGCT CATGGCACAG GTAGAATCGG AAGAGCAAGG CTTAAATCCT
GATGAAGAGG AGCTTAAGCT TGATGTGGGT CTGGATGAGT TTCCTGATGT GATTGGTGAT
ATTCGAGATA TTGATGTGGA TAGTGGTGCG GAAGCAGCTG GTAAGCTGGA TTTGGCCAAA
ATCTACATTG AAATGAACGA TGAGAAAGGG GCGATTAAAC TGCTCGAAGA GGCGATTGTT
GACGGCGATG ATGAGATTCG CCAACAAGCT AAACGGCTGA TCGATGTGCT GAATGGGCGA
GTGTAG
|
|---|
| Protein sequence | MDPIYLTNLR TSKFKAHTEP FMRRFFQRLL LPVAVMVVTQ TSFVSAESIR LVGPDGQVQP
TPQYSENIVR NSANNEPGRF FGPTSANQTL WSIASQLRPS SSVTVQQTLL AIYQLNPQAF
ENQNIHTLIP GSTLRVPSLA QISRNSTQDA VNIMASHQAK LNQTPDTPVR PVAPPRPAPV
ATPKVEAVAQ TPPQVTPTTA PQEKAPTELK TPAKPSQSTD AEVMALEEKN HTLRLMLSQV
QSEVSTLKEE LGDENRIRSE VERLLEEERR KAEEASRLAP SALDNLLSNG WLVALLALIP
GLLIAIVVLL LLNRRSSAQQ ENPTQNNITS EMPTAAPVTL GPEQTEDIGD DLLLDDDLFS
TTDDKEENDA EKAFSDEDDV FADLNETDLD FNLDGQDSDD LFVGIDDDGD LDTEFDALNE
SANGISVNAD DKALGLEEME RALNDVSEPT DNDDLNSFDL ADENQMSEDD IEALLSGDEE
NELLSDGKVD QSLLDDLLAS ELDALDDEPA IQDTETLDTL LNDELASLSE EDDDEFDLSG
AGVAGDQDLD DLFASIEEQA DLEQLEAKAI DETALLDEIL AEQDAPLSEE STELLDELLD
DFDKPENDEF DAQTADLLQP EEPILDLEED STQLLNEVLG EPVPEELASG LEIDQNSTEL
LDELLDDLDL DDESIEATEF SVAPEKLSVE DGTELFDELL EIEQHPESAE SLPELATEDE
FNSDTFIDDL LNSAPAKDPL LEPVLDENEA FAQADDFDFN PEIEGGLEDD LSQPSALPAN
EFGTPQDEDW VFDEDDSSPT LEGNAELELS SAEDDLPEQT TATNETADEL LADLAAQPQS
NTVDTSDDAL APDGLSQSVE EPLTLNDLEL PEENDEPQLA EVTPSSAFDE QQVETEIEPE
SEPLAAEASN DESDLTALNE LDLPEYTEED VLADVQLEPA AESEVEPDLE LVNEPVTEEA
FTELDELDLP EYTEEDALAD AQLEPVAESE VEPELDLASE PAEEEAFTEL NKLDLPEYTE
EDALADAQLE SATESEVESE LELVSEPAAE EAFTELDELD LPEYTEEDAL ADSQLEPAAE
SEVEPELELV SEPVTEEAFT ELDELDLPEY TEEDALADAQ LEPAVESEVE PELELASEPA
EEEASTELNE LDLPEYTEED ALADAQLEPA AESEVESELE LASDLEEEEP FTELNELDLP
EYTEEDALAD AQLEPAVESE VEPELELATE PAEEEAFPEL DELDLPEYTE EDALADAQLE
PAAEAEVEPE LELASDLEEK ETFTELDELD LPEYTEEDAL ADAQLEPAAE SEVEPELELA
SVLEEEDSFT ELDELDLPEY TEKDALADAQ LEPAAESEVE PELGDETETL AQETESDALV
ADEDLLASVE SAVDEVQPEL LGATQDVPPT QSLANKAFDE EALHDWLSDN PDGEKPFSFD
RPLDAKTIDS AGMDIDAMLQ MGGEDWNGFH LTPDQQAQLP DDVPEDEQAI WASETPEPQA
KPENWGSQED LLDFDPQRDG YMTIDELMAQ VESEEQGLNP DEEELKLDVG LDEFPDVIGD
IRDIDVDSGA EAAGKLDLAK IYIEMNDEKG AIKLLEEAIV DGDDEIRQQA KRLIDVLNGR
V
|
|---|
| |