Gene VC0395_A0502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0502 
Symbol 
ID5136277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp536350 
End bp536919 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content48% 
IMG OID640531960 
Productphosphodiesterase 
Protein accessionYP_001216453 
Protein GI147674558 
COG category[R] General function prediction only 
COG ID[COG0622] Predicted phosphoesterase 
TIGRFAM ID[TIGR00040] phosphoesterase, MJ0936 family 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTTTTA AGAGGTTAAC CATGAAACTA TTTTTTGTCT CAGATCTGCA TGGTTCTTTA 
TCTGCGACCG AACAAGCACT TGCGCTTTAT CAAGCATCGG GGGCGCAATC TCTGATTTTG
TTGGGCGATG TATTAAATCA CGGGCCACGT AATCCTATCC CGCAAGGGTA CAACCCTGTA
GCCGTCGCTG AAAAATTGAA TCAGTTTGCT CAGCAGATCA TTGCTGTGCG TGGGAACTGT
GATAGTGAAG TCGATCAGAT GCTGTTGAGT TTTCCTATGA TGAGTGACTC AGCATGGGTA
CTGTTAAGTT CAGGGCGACG CTTACTTTTA ACGCATGGGC ATCTTTACCA TAAAGATAAG
CTGCCGCCGC TTAGCGATGG GGATGTTTTG GTGCATGGCC ACACGCACAT TCCTGTGGCC
GAACAAGTTG GCTCAATATA CCTAGTTAAC CCGGGTTCTA TGACGTTTCC CCGCGGTGAG
TATGCCGCGA GCTATGGCGT GCTGGAAGGC GATACAATGA AGGTGATATC GGTTGCTGGC
GAAACGCTGG CCAGTTGCCT CCTTCAATAA
 
Protein sequence
MFFKRLTMKL FFVSDLHGSL SATEQALALY QASGAQSLIL LGDVLNHGPR NPIPQGYNPV 
AVAEKLNQFA QQIIAVRGNC DSEVDQMLLS FPMMSDSAWV LLSSGRRLLL THGHLYHKDK
LPPLSDGDVL VHGHTHIPVA EQVGSIYLVN PGSMTFPRGE YAASYGVLEG DTMKVISVAG
ETLASCLLQ