Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0439 |
Symbol | |
ID | 5135423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 465849 |
End bp | 468959 |
Gene Length | 3111 bp |
Protein Length | 1036 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640531897 |
Product | putative multidrug resistance protein |
Protein accession | YP_001216390 |
Protein GI | 147674044 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00223634 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGGTTGT CAGATGTATC GGTAAAGCGC CCTGTCGCAG CGTTAGTACT GAGTATGTTG CTGTGCGTGT TTGGTGTGGT CTCTTTCACT AAACTTGCAG TACGTGAAAT GCCGGATATT GAAAGCCCTG TGGTATCGGT TTCCACCCGT TATCAAGGCG CTTCGGCCAC CATTATTGAA AGTCAGATCA CCAGCGTGCT AGAGGATCAA TTAGCGGGCA TCAGTGGGAT TGATGAGATT ACCTCAGTTA GCCGCAACGG AATGTCTCGT ATCACGGTGA CCTTCGAGCT TGGTTATGAT CTCAATACCG GTGTGAGTGA CATTCGTGAT GCGGTGGCTC GGGCGCAGCG TTCACTGCCT GAAGAAGCGG ACGATCCGCA GGTGTTCAAG AATAATGGCT CTGGTCAGGC GTCGGTCTAT ATCAATCTCA GCTCCTCAGA AATGGATCGC ACTCAGTTGA CCGATTACAT CGAGCGGGTG TTGCTCGATC GGTTTAGCTT GATCTCCGGT GTGAGTTCGG TGGATGTCTC TGGCGGCCTC TATAAAGTGA TGTATGTACG CATCAAGCCA GAACTGATGG CGGGGCGCGG CGTTGCGACC AGCGATATTT CTGATGCACT CAACAAAGAG AACCTCGAAA GTCCCGGAGG TCAGGTTCGC AACGATTCGA CCGTGATGTC GGTGCGTACC GCGCGCGGTT ATCAATCTGC TGAAGATTTT GAGTATCTGG TGGTGAAACG TGCCAGTGAT GGTACCCCCA TCTACCTCAA AGATGTCGCG GATGTGTTTA TTGGGGCGGA AAACGAAAAC TCGACCTTTA AAAGTGATGG CATCGTCAAC GTGAGCATGG GGATTGTGCC GCAATCCGAC GCGAACCCGC TGGAAGTGGC GAAGCGCGTG CATGAAGAAG TGGATAAGGT TCAGCAGTTT TTACCCAAGG GTACCCGTTT AGCCATTGAC TATGACTCAA CGGTGTTTAT TGAGCGCTCA ATAAGCGAGG TGTATAGCAC ACTCTTTATC ACGGGTGGCT TAGTGATTTT GGTGTTGTAC ATTTTTATCG GCCAGTTGCG AGCCACCTTA ATTCCTGCGG TAACGGTTCC GGTTTCGCTG ATCTCGGCCT TTATGGCTGC GTACTACTTC GGATTTTCTA TTAACCTCAT CACCTTAATG GCGCTGATCT TATCGATTGG TCTGGTGGTC GATGATGCCA TCGTGGTCGT TGAAAATATT TTTCACCACA TTGAACGGGG CGAAAAACCT CTTTTAGCCG CCTACAAAGG TACACGAGAA GTTGGCTTTG CCGTGATAGC CACGACTTTG GTACTGGTGA TGGTGTTTCT GCCGATCTCG TTTATGGACG GGATGGTCGG ACTCCTGTTT ACTGAATTCT CCGTACTACT GGCGATGGCA GTGATTTTCT CTTCTCTGAT CGCGTTAACG CTGACGCCAG TGCTTGGCAG TAAGCTTTTA AAAGCCAATG TAAAACCGGG ACGCTTTAAT CAGTTGATTG ATAGGCTGTT CGCACGACTG GAATCGGGCT ATCGCCAAGT GGTAAGCCGA GCCATTCGTT GGCGTTGGGC GGCGCCGGTT GTGATTGCGG CTTGTATTGG TGGTAGTTAT GGTTTGATGC AACTGGTGCC AGCTCAGCTA ACCCCTTCCG AAGATCGCGG TGTGATTTTC TCTTTTGTGC GTGGTGCTGA TGCCACCAGT TATAACCGCA TGGCGGCTAA TATGGATTTG GTTGAGCAGC GGTTGATGCC CTTATTGGGT CAAGGCTTTT TGAAATCGTT TAGTATTCAA TCACCTGCTT TTGGTGGTAA CGCCGGTGAC CAAACCGGTT TCGTGATCAT GATCCTTGAG GATTGGAATG ATCGCACCGT TACTGCTCAG GAAGCATTAA GCCAAGTACG TAAAGCCTTA GCGGGCATTC CTGATGTGCG GGTATTCCCA TTCATGCCCG GTTTTCGTGG GGGCTCTAAT GAGCCTGTAC AGTTTGTGCT TGGTGGCTCG GATTATAGCG AGCTCAAAAC GTGGGCTGAG AAGTTAGAAG AGGAAGCGGA GAAGTCACCG TTTATGACGG GGGCTGATAT CGATTACTCA GAAAAAACGC CAGAGTTGGT GGTGACGATT GATAAGCAGC GCGCGGCGGA ATTAGGAATC AGCGTAAAAT CGATCTCCGA TACACTAGAG GTGATGCTGG GTGGCAAAAA AGTGACGACC TTCGTTGAGC GTGGTGAAGA GTATGATGTG TATCTGCGTG GGGATGAAAA CAGCTTCAAC AATGCGGCGG ATTTAAGCCA AATCTATATG CGAACCGCAA CCGGTGAACT GGTGACACTG GATACGGTGA CGCGTATTGA TGAAGTGGCG TCAGCGATTC GTTTGGCGCA CTACAATAAA CAGAAATCCG TTACCATTAC CGCAAACCTA GAAGCTGGGT ACACGTTAGG GCAAGCGCTC GATTTTCTTG ACCAAAAAGC GCAAGAGATA CTGCCAAATG ATATCTCCGT TAGCTACTCG GGGGAGTCGA AAGATTTCAA AGAGAACCAA TCAAGCGTAG CCATTGTGTT TGCTCTGGCG CTGCTGGTTG CTTATTTGGT GCTGGCTGCT CAGTTTGAAA GCTTTATCAA CCCGCTGGTG GTAATGCTGA CGGTACCTAT GGGAGTATTT GGCGGTTTCC TTGGGCTGTT TGTTATGGGA CAAGGGATGA ACATTTACAG CCAGATTAGC ATGATCATGC TGATTGGTAT GGTCACCAAA AATGGCATTT TGATTGTCGA ATTTGCTAAC CAACTGCGTG ATCGCGGTGT TGAGTTTGAA AAGGCGATCA TTGATGCATC GGCGCGCCGT TTGCGTCCAA TCCTGATGAC GGCTTTTACG ACACTGGCTG GCTCTATTCC TTTGATCGTC TCAACAGGTG CAGGCTATGA GAGCCGAATT GCGGTCGGTA CGGTGATTTT CTTTGGGATG GGGTTTGCAA CCTTAGTGAC CTTGTTGGTG ATTCCTGCCA TGTATCGCTT GATTTCCGGT TCAACCCAAG CCCCCGGTCA TGTTGAAGCA GAGCTCAACC ATGAGCTGCA ACAAGATGTG AAAGGCCGCG CTCAACACTA A
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Protein sequence | MWLSDVSVKR PVAALVLSML LCVFGVVSFT KLAVREMPDI ESPVVSVSTR YQGASATIIE SQITSVLEDQ LAGISGIDEI TSVSRNGMSR ITVTFELGYD LNTGVSDIRD AVARAQRSLP EEADDPQVFK NNGSGQASVY INLSSSEMDR TQLTDYIERV LLDRFSLISG VSSVDVSGGL YKVMYVRIKP ELMAGRGVAT SDISDALNKE NLESPGGQVR NDSTVMSVRT ARGYQSAEDF EYLVVKRASD GTPIYLKDVA DVFIGAENEN STFKSDGIVN VSMGIVPQSD ANPLEVAKRV HEEVDKVQQF LPKGTRLAID YDSTVFIERS ISEVYSTLFI TGGLVILVLY IFIGQLRATL IPAVTVPVSL ISAFMAAYYF GFSINLITLM ALILSIGLVV DDAIVVVENI FHHIERGEKP LLAAYKGTRE VGFAVIATTL VLVMVFLPIS FMDGMVGLLF TEFSVLLAMA VIFSSLIALT LTPVLGSKLL KANVKPGRFN QLIDRLFARL ESGYRQVVSR AIRWRWAAPV VIAACIGGSY GLMQLVPAQL TPSEDRGVIF SFVRGADATS YNRMAANMDL VEQRLMPLLG QGFLKSFSIQ SPAFGGNAGD QTGFVIMILE DWNDRTVTAQ EALSQVRKAL AGIPDVRVFP FMPGFRGGSN EPVQFVLGGS DYSELKTWAE KLEEEAEKSP FMTGADIDYS EKTPELVVTI DKQRAAELGI SVKSISDTLE VMLGGKKVTT FVERGEEYDV YLRGDENSFN NAADLSQIYM RTATGELVTL DTVTRIDEVA SAIRLAHYNK QKSVTITANL EAGYTLGQAL DFLDQKAQEI LPNDISVSYS GESKDFKENQ SSVAIVFALA LLVAYLVLAA QFESFINPLV VMLTVPMGVF GGFLGLFVMG QGMNIYSQIS MIMLIGMVTK NGILIVEFAN QLRDRGVEFE KAIIDASARR LRPILMTAFT TLAGSIPLIV STGAGYESRI AVGTVIFFGM GFATLVTLLV IPAMYRLISG STQAPGHVEA ELNHELQQDV KGRAQH
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