Gene VC0395_A0438 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0438 
Symbol 
ID5135859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp464791 
End bp465849 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content49% 
IMG OID640531896 
Producthypothetical protein 
Protein accessionYP_001216389 
Protein GI147674519 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.66929e-14 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAA ACACTGTACT TTCATTGACC TTACTGACCC TGCTAATGAA CAGCGCTGTG 
CTATCGGCCA AAGAGCCGAA CCAGCCGCCC GCGATTTCTG TTGTGACAGA GTCGGTTCAA
TCTCAGCAAA TTTCTCAATC TCTTTCTGTT GTGGGTAAGC TTAAAGCCGA GCAATCGGTC
GACATTGCCG CTGAAGTGGC GGGTAAAGTG GACATGATTG CGGTGCAAGC CAATCAGCAA
GTTAAAAAAG GTCAGATTCT GATCAAATTG GATGATGACA AAGCTCAAGC GGCCTTGGTG
GAAGCTAAAG CTTATTTACA AGATGAGCAG CGTAAACTGA CGGAATACGA GCGCTTGCTA
AAACGTAATG CGATTACGCC CACGGAAATT GATGCACAGC GCGCCCGAGT GGAGATTGGT
CAAGCGAGAT TGAATGCCGC TCAGGCCAAT TTGGCCGATT TACACATTAC TGCTCCTTTT
GATGGCACGG TTGGGTTTAT CGATTTTAGC CGCGGTAAGT GGGTGAGTGC GGGCTCTGAA
TTACTGACGC TGGATAATCT TTCCTTGATG CGGCTCGACC TGCAAATTCC AGAACGTTAT
CTGCCACAGT TAAGCAAGGG CATGAAGGTG CAAGGCAGTA GCGAAGCGTG GCCAAACGTG
CAGTTTGAAG GTTCGGTGGT GGCTGTGGAT TCGCGTATCA ATCAAGAAAC CTTAAATTTA
CGAGTGCGCG TGCATTTCCC CAATCCAGAT CAGCGCCTCA AGCCGGGCAT GTTGATGTCG
GCACGCATCC ATTTCCCCGC TATTAGTGCG CCGATTATTC CTGTGCAGGC CCTTGAGTAC
TCCGGCACCA AACGTTTTGT TTACGTGATT GGTGAAGACA ATGTAGCCAA ACGACGTGAA
GTGAGCCTGG GCGCTCGGGT TGAAAATCAG GTCGTGATTG AGAAAGGCTT ACAGATTGGC
GAGAAAATTG TCGTTCAAGG CATAGTCAAT ATGCGTGACA ACGCGCGTGT TAGCGAAGTC
ACCGTAGAAG GGCGTCCGCT GAAGAAGGAT GACAAATAA
 
Protein sequence
MNKNTVLSLT LLTLLMNSAV LSAKEPNQPP AISVVTESVQ SQQISQSLSV VGKLKAEQSV 
DIAAEVAGKV DMIAVQANQQ VKKGQILIKL DDDKAQAALV EAKAYLQDEQ RKLTEYERLL
KRNAITPTEI DAQRARVEIG QARLNAAQAN LADLHITAPF DGTVGFIDFS RGKWVSAGSE
LLTLDNLSLM RLDLQIPERY LPQLSKGMKV QGSSEAWPNV QFEGSVVAVD SRINQETLNL
RVRVHFPNPD QRLKPGMLMS ARIHFPAISA PIIPVQALEY SGTKRFVYVI GEDNVAKRRE
VSLGARVENQ VVIEKGLQIG EKIVVQGIVN MRDNARVSEV TVEGRPLKKD DK