| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0238 |
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| Symbol | rluD |
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| ID | 5136514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 248627 |
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| End bp | 249601 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640531698 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_001216201 |
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| Protein GI | 147673459 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.846353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCATC AGATTGAATT AACTCAAACA GTAAAAGATA GCCAGCTTGG TCAACGTCTT
GATCAAGCTG TGGCTGAATT ATTTACCGAC TTTTCCCGCT CACGTTTAAA AGAGTGGTTG
TTGGAAGGCA AGATTGCCGT GAATGGTGAT GTCATCACCA AACCGCGTAC CAAAGTGATG
GGTGGCGAGG TGATTACCGT TCAGGCAGAA CTGGAAGACG AACAGCGCTG GGAAGCGCAG
GATTTGCCAC TGAACATTGT GTATGAAGAT GACGACATTA TCGTTATTAA CAAACCGCGT
GACTTTGTGG TTCACCCCGG TGCTGGTCAG GCGGATAAAA CCGTGCTTAA CGCATTGCTG
TTCCATTATC CGCCGATTGC TGAAGTGCCA CGTGCAGGCA TCGTCCATCG TCTCGATAAA
GATACAACGG GTTTGATGGT GGTCGCGAAA ACGGTTCCCG CGCAAACACG CTTGGTACGT
GCACTACAAA AGCGCGACGT GACTCGTGAG TACGAAGCGA TTGTGATTGG CACAATGACC
GCGGGTGGCA TGATTGATAA GCCGATTGGC CGTCACTCGA CCAAACGTAC TTTAATGTCG
GTCTCTCCGA TGGGCAAACA TGCCGTGACC CATTACCGTG TGGCAGAGCA TTTCCGTGAA
CATACGCGTT TGCGTCTACG TTTGGAAACG GGTCGTACCC ACCAAATTCG TGTGCACATG
GCTTATCTGC AACACCCACT CTTGGGTGAT ACGGCTTATG GTGGTCGTGC ACGCATTCCG
AAAGGTGCGA CGGAAGAGCT GACGGAAATG ATTCGTGACT TCGATCGCCA AGCACTGCAC
GCGGTGATGT TGAAATTTGA GCATCCGGTT ACGGGGGAAG AGCTCGAATT CCATGCACCA
GTGCCTGATG ATATGGTTGA GATGACGCTT GCACTGCGTG AAGATGCGAA GCTAAACCGC
ACTGAAGAGT ATTAA
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| Protein sequence | MAHQIELTQT VKDSQLGQRL DQAVAELFTD FSRSRLKEWL LEGKIAVNGD VITKPRTKVM
GGEVITVQAE LEDEQRWEAQ DLPLNIVYED DDIIVINKPR DFVVHPGAGQ ADKTVLNALL
FHYPPIAEVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVR ALQKRDVTRE YEAIVIGTMT
AGGMIDKPIG RHSTKRTLMS VSPMGKHAVT HYRVAEHFRE HTRLRLRLET GRTHQIRVHM
AYLQHPLLGD TAYGGRARIP KGATEELTEM IRDFDRQALH AVMLKFEHPV TGEELEFHAP
VPDDMVEMTL ALREDAKLNR TEEY
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