| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0217 |
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| Symbol | ispH |
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| ID | 5135723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 223476 |
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| End bp | 224438 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640531677 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001216180 |
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| Protein GI | 147673232 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.232349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAC CAATGAAAAT ACTGTTAGCC AACCCTCGCG GTTTCTGCGC GGGTGTGGAT
CGCGCGATCA GCATTGTTGA GCGTGCGCTG GAGCTTTATC AGCCGCCGAT TTATGTGCGT
CATGAAGTGG TGCACAACCG CTTTGTGGTC GAGGGTTTAA AGCAGCGTGG AGCCCGCTTT
GTTGAGGAAT TAAATGAAGT TCCCGACGAT AACATTGTGA TTTTTTCGGC TCATGGCGTG
TCGCAAGCAG TTCGCCAAGA AGCGAAAGAG CGTTCACTGA CGGTATTTGA TGCGACTTGT
CCACTGGTGA CTAAAGTGCA TATGGAAGTG GCGCGTGCCA GTCGCAAACA TATGGAAGTA
GTGTTGATTG GTCATGCTGG CCATCCTGAA GTGGAAGGCA CGATGGGGCA GTATGCCAGT
GATACAGGCG GCATGTATCT GGTCGAAAAG CCAGAAGATG TCGTATCACT GCAAGCTAAG
GTGAAAGATC CAAGTAACCT GCACTATGTG AGCCAAACAA CGTTGTCAGT CGATGAAACT
GCGGATGTGA TTGATGAGCT GCGCCGTGTA TTTCCGAAGA TCCAAGGCCC GCGTAAAGAT
GACATCTGTT ATGCCACCCA AAACCGTCAA GATGCGGTGC GTATCTTGGC TGAGCAAGTC
GATGTGATGG TGGTGGTGGG CTCGAAAAAC TCATCGAACT CGACTCGATT AAAGGAGTTG
GCTGAGAAGT TGGGCACTCC CGGTTACTTG ATTGATTGCC CACAGGATAT CGACCCTGGG
GGGTTCGTTG ATGCGCAGTT AATTGGGGTG ACTGCGGGCG CTTCGGCACC AGAAGAGTTG
GTAAACCAAA TCTTGGAACG CATCAAAGAG CTCGGCGCAA CGTCAGTAGA AGAGGTGCTT
GGCCGCGAAG AGAACATGTT CTTTGAAGTG CCTAAAGAGC TGCAAATTAA GCAAGTCGAC
TAG
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| Protein sequence | MSKPMKILLA NPRGFCAGVD RAISIVERAL ELYQPPIYVR HEVVHNRFVV EGLKQRGARF
VEELNEVPDD NIVIFSAHGV SQAVRQEAKE RSLTVFDATC PLVTKVHMEV ARASRKHMEV
VLIGHAGHPE VEGTMGQYAS DTGGMYLVEK PEDVVSLQAK VKDPSNLHYV SQTTLSVDET
ADVIDELRRV FPKIQGPRKD DICYATQNRQ DAVRILAEQV DVMVVVGSKN SSNSTRLKEL
AEKLGTPGYL IDCPQDIDPG GFVDAQLIGV TAGASAPEEL VNQILERIKE LGATSVEEVL
GREENMFFEV PKELQIKQVD
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