| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0130 |
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| Symbol | hrpB |
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| ID | 5136673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 117088 |
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| End bp | 119550 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640531590 |
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| Product | ATP-dependent RNA helicase HrpB |
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| Protein accession | YP_001216095 |
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| Protein GI | 147673788 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCACCAC TGCCCATTAT TGAGGTGATG CCGAAGCTGT TGTCCGGTAT CACCAACTCT
CCACAACTCA TCCTCAAAGC CGCGCCCGGT GCCGGTAAGT CCACCTACTT TCCGTTGCAG
TTACTGCAAG CGGGAGGGTT CCACGGCAAA ATCATTATGC TAGAGCCACG GCGTTTGGCT
GCGCGTAACA TTGCCCGCTA TTTGGCGCAG CAACTGGGGG AAGAGGTTGG GCAGCGTGTA
GGGTATCGGG TGCGCGGTGA AAACCGAGTC AGCCGAGCCA CTCAGTTGGA GATTGTTACG
GAAGGCATTA TGACGCGCAT GCTACAAAAC GATCCGGAAC TGGATGGCGT AGATGTGCTG
ATTTTCGATG AGTTTCATGA GCGCAGCATT CACGCTGATA CTGCCTTGGC GTTGGCGCTC
GAAGTGCAGT CTGCGCTGCG GGAAGATTTA AAAATCGTGG TGATGTCGGC CACACTCGAT
CAGCAAGCTT TGCAAAACTT ACTGCCGCAA GCGAGTTATG TCGAATCACA AGGGCGCGGT
TTCCCGATAG AGATTCGCTA TCAACCTCTG CGCTCTGATG AGCCGTTGGT GGCGGCGATG
CAGCGACAAA TTCGTCATCT TCTGCAGCAC GAAACGGGCT CATTGCTGGC CTTTTTGCCC
GGTGCCGCCA GCATCAACCA GTTAACCGAA CAGTTGAGCG ATTTGGCTAG CGAGGTTGAA
ATCTGCCCTT TGTATGGACA GATGGAGTTC GCCGCGCAGC AGCGCGCAAT TGCTCCCACG
GCGGCGGGGA TGCGCAAAGT GGTCTTGGCG ACCAATATTG CTGAAACTTC GCTGACCATC
GAAGGCATTC GCATAGTGCT TGATAGTGGG CTTGAGCGCA GTGCGCGTTT TGATCTCAAA
ACCGGCATTA CTCGCCTTGA ACAAGTGCGG ATTGCTCAAT CCTCTGCCGA GCAGCGGGCA
GGGCGTGCCG GACGTTTAGA GCCGGGGATT TGCGTGCGCT TATACAGCGA AGCGCAGCTT
AAGCAGCAGC CTTGGGTGTC AGAGCCCGAA ATGCTACATA CTGACTTAGC GCCACTGGCA
TTAGAACTCG CGCAATGGGG CGCGCAGCCG AGCGATTTGG CTTGGTTGAA TTTGCCACCG
AGCAGTGCGT TTGCACAGGC GCAGCAACTG TTGCAGCGTC TTGGGCTTTT GGATGCACGC
ACGCAACTCA CAGCGGCCGG TAAAGAGGCA CATTTGCTGG GCGTTGAGCC GCGGATTGCT
GCGATGCTGC TGAGCGCCGA TCGCTTAGGT GAGTCGGCCT TGCAAAGCGC TTTAGCGTTG
GCGGTGTTAC TTGAAGAGCC GGAACGGCAA GTGATTGATG TACAACATAG CTTGCACCGT
TGGCAGCAAG GTCGTCATCC CAAACAAAAG CTGCTGATCC AACGCGCCCA ATCTTTGGCG
CACAAACTCG ATACGGCATT TTCACTCTCC TCGGTTGATT CAACATGGCT GCCTTTGGTG
GCGTGTTTGG CCTTTCCAGA TCGAATTGCC CAGCAGCGCG GCCAACAAAC AGGGCAATTT
TTACTTGCCA ATGGCCATGG CGCTTGGCTG GCGGTTGAAG AGCGCTTGTC CGCCGCCGAT
TATCTGGTCG CCTTGGATTT GATGCGCGGC CAAACTCAAG CGAGTCAAAT ATTCAGTGCC
CTTGAGCTTG ATATCCACGC GCTTGAACGC CTATTACCAG CGCTGATTTC TCGGGTTGAA
CAAGTGGATT GGGATGAAAA AGCCGGCCGC TTGAGCGCGG AAGCGCAGTG GCGAATCGAT
CAATTGGTGC TTCGTCGTGA AAAGCTGCCA GAACCCGATA AACAAAAAAT GACACAAGCT
TTGCTGAGCT ATGTACGGCG CAAAGGCTTA ACAGTGTTAC AGTGGAGCGA AGACGCGAGC
GAGTGGCTTG CCCGTGCACG CTGCGCTGCC GAATGGCTGC CAGAAGAAGC GTGGCCAGCC
TTGGACGATG AAACGCTACT GGCGCGCCTC GAACTGTGGT TAGAGCCTTA TTTGGCTGGG
GTGACCTCAG TGAAAGGTTT GCAGAGTGTC TCCGTGTTGC AAGCGCTGAA GCACTATCTT
GGCTGGGAGC TCAGTCAGCA GCTTGACGAG TGGCTGCCAA CCCATCATCT GCTGCCAACG
GGGAATCATA AAAAAATCCG TTATCAGTTA GGGATGGAGC CTACGCTCTC GGTGCGCATG
CAGGAAGTGT TTGGCGAGCA AAGTTCGCCA CGCGTTGCCA AAGGGACGCG CGCCGTGGTG
ATGGAACTGC TTTCCCCCGC GCAGCGACCG TTGCAAGTTA CCCGCGATCT CGCCAGTTTT
TGGGCGGGCG CGTACAAAGA AGTGCAAAAA GAGATGAAAG GCCGCTACCC GAAACACGTG
TGGCCGGATG ATCCTGCCAA TCATGTGGCA ACCAGTAAAA CCAAACGACA ATTGAACGCA
TGA
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| Protein sequence | MSPLPIIEVM PKLLSGITNS PQLILKAAPG AGKSTYFPLQ LLQAGGFHGK IIMLEPRRLA
ARNIARYLAQ QLGEEVGQRV GYRVRGENRV SRATQLEIVT EGIMTRMLQN DPELDGVDVL
IFDEFHERSI HADTALALAL EVQSALREDL KIVVMSATLD QQALQNLLPQ ASYVESQGRG
FPIEIRYQPL RSDEPLVAAM QRQIRHLLQH ETGSLLAFLP GAASINQLTE QLSDLASEVE
ICPLYGQMEF AAQQRAIAPT AAGMRKVVLA TNIAETSLTI EGIRIVLDSG LERSARFDLK
TGITRLEQVR IAQSSAEQRA GRAGRLEPGI CVRLYSEAQL KQQPWVSEPE MLHTDLAPLA
LELAQWGAQP SDLAWLNLPP SSAFAQAQQL LQRLGLLDAR TQLTAAGKEA HLLGVEPRIA
AMLLSADRLG ESALQSALAL AVLLEEPERQ VIDVQHSLHR WQQGRHPKQK LLIQRAQSLA
HKLDTAFSLS SVDSTWLPLV ACLAFPDRIA QQRGQQTGQF LLANGHGAWL AVEERLSAAD
YLVALDLMRG QTQASQIFSA LELDIHALER LLPALISRVE QVDWDEKAGR LSAEAQWRID
QLVLRREKLP EPDKQKMTQA LLSYVRRKGL TVLQWSEDAS EWLARARCAA EWLPEEAWPA
LDDETLLARL ELWLEPYLAG VTSVKGLQSV SVLQALKHYL GWELSQQLDE WLPTHHLLPT
GNHKKIRYQL GMEPTLSVRM QEVFGEQSSP RVAKGTRAVV MELLSPAQRP LQVTRDLASF
WAGAYKEVQK EMKGRYPKHV WPDDPANHVA TSKTKRQLNA
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