Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0130 |
Symbol | hrpB |
ID | 5136673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 117088 |
End bp | 119550 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640531590 |
Product | ATP-dependent RNA helicase HrpB |
Protein accession | YP_001216095 |
Protein GI | 147673788 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCACCAC TGCCCATTAT TGAGGTGATG CCGAAGCTGT TGTCCGGTAT CACCAACTCT CCACAACTCA TCCTCAAAGC CGCGCCCGGT GCCGGTAAGT CCACCTACTT TCCGTTGCAG TTACTGCAAG CGGGAGGGTT CCACGGCAAA ATCATTATGC TAGAGCCACG GCGTTTGGCT GCGCGTAACA TTGCCCGCTA TTTGGCGCAG CAACTGGGGG AAGAGGTTGG GCAGCGTGTA GGGTATCGGG TGCGCGGTGA AAACCGAGTC AGCCGAGCCA CTCAGTTGGA GATTGTTACG GAAGGCATTA TGACGCGCAT GCTACAAAAC GATCCGGAAC TGGATGGCGT AGATGTGCTG ATTTTCGATG AGTTTCATGA GCGCAGCATT CACGCTGATA CTGCCTTGGC GTTGGCGCTC GAAGTGCAGT CTGCGCTGCG GGAAGATTTA AAAATCGTGG TGATGTCGGC CACACTCGAT CAGCAAGCTT TGCAAAACTT ACTGCCGCAA GCGAGTTATG TCGAATCACA AGGGCGCGGT TTCCCGATAG AGATTCGCTA TCAACCTCTG CGCTCTGATG AGCCGTTGGT GGCGGCGATG CAGCGACAAA TTCGTCATCT TCTGCAGCAC GAAACGGGCT CATTGCTGGC CTTTTTGCCC GGTGCCGCCA GCATCAACCA GTTAACCGAA CAGTTGAGCG ATTTGGCTAG CGAGGTTGAA ATCTGCCCTT TGTATGGACA GATGGAGTTC GCCGCGCAGC AGCGCGCAAT TGCTCCCACG GCGGCGGGGA TGCGCAAAGT GGTCTTGGCG ACCAATATTG CTGAAACTTC GCTGACCATC GAAGGCATTC GCATAGTGCT TGATAGTGGG CTTGAGCGCA GTGCGCGTTT TGATCTCAAA ACCGGCATTA CTCGCCTTGA ACAAGTGCGG ATTGCTCAAT CCTCTGCCGA GCAGCGGGCA GGGCGTGCCG GACGTTTAGA GCCGGGGATT TGCGTGCGCT TATACAGCGA AGCGCAGCTT AAGCAGCAGC CTTGGGTGTC AGAGCCCGAA ATGCTACATA CTGACTTAGC GCCACTGGCA TTAGAACTCG CGCAATGGGG CGCGCAGCCG AGCGATTTGG CTTGGTTGAA TTTGCCACCG AGCAGTGCGT TTGCACAGGC GCAGCAACTG TTGCAGCGTC TTGGGCTTTT GGATGCACGC ACGCAACTCA CAGCGGCCGG TAAAGAGGCA CATTTGCTGG GCGTTGAGCC GCGGATTGCT GCGATGCTGC TGAGCGCCGA TCGCTTAGGT GAGTCGGCCT TGCAAAGCGC TTTAGCGTTG GCGGTGTTAC TTGAAGAGCC GGAACGGCAA GTGATTGATG TACAACATAG CTTGCACCGT TGGCAGCAAG GTCGTCATCC CAAACAAAAG CTGCTGATCC AACGCGCCCA ATCTTTGGCG CACAAACTCG ATACGGCATT TTCACTCTCC TCGGTTGATT CAACATGGCT GCCTTTGGTG GCGTGTTTGG CCTTTCCAGA TCGAATTGCC CAGCAGCGCG GCCAACAAAC AGGGCAATTT TTACTTGCCA ATGGCCATGG CGCTTGGCTG GCGGTTGAAG AGCGCTTGTC CGCCGCCGAT TATCTGGTCG CCTTGGATTT GATGCGCGGC CAAACTCAAG CGAGTCAAAT ATTCAGTGCC CTTGAGCTTG ATATCCACGC GCTTGAACGC CTATTACCAG CGCTGATTTC TCGGGTTGAA CAAGTGGATT GGGATGAAAA AGCCGGCCGC TTGAGCGCGG AAGCGCAGTG GCGAATCGAT CAATTGGTGC TTCGTCGTGA AAAGCTGCCA GAACCCGATA AACAAAAAAT GACACAAGCT TTGCTGAGCT ATGTACGGCG CAAAGGCTTA ACAGTGTTAC AGTGGAGCGA AGACGCGAGC GAGTGGCTTG CCCGTGCACG CTGCGCTGCC GAATGGCTGC CAGAAGAAGC GTGGCCAGCC TTGGACGATG AAACGCTACT GGCGCGCCTC GAACTGTGGT TAGAGCCTTA TTTGGCTGGG GTGACCTCAG TGAAAGGTTT GCAGAGTGTC TCCGTGTTGC AAGCGCTGAA GCACTATCTT GGCTGGGAGC TCAGTCAGCA GCTTGACGAG TGGCTGCCAA CCCATCATCT GCTGCCAACG GGGAATCATA AAAAAATCCG TTATCAGTTA GGGATGGAGC CTACGCTCTC GGTGCGCATG CAGGAAGTGT TTGGCGAGCA AAGTTCGCCA CGCGTTGCCA AAGGGACGCG CGCCGTGGTG ATGGAACTGC TTTCCCCCGC GCAGCGACCG TTGCAAGTTA CCCGCGATCT CGCCAGTTTT TGGGCGGGCG CGTACAAAGA AGTGCAAAAA GAGATGAAAG GCCGCTACCC GAAACACGTG TGGCCGGATG ATCCTGCCAA TCATGTGGCA ACCAGTAAAA CCAAACGACA ATTGAACGCA TGA
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Protein sequence | MSPLPIIEVM PKLLSGITNS PQLILKAAPG AGKSTYFPLQ LLQAGGFHGK IIMLEPRRLA ARNIARYLAQ QLGEEVGQRV GYRVRGENRV SRATQLEIVT EGIMTRMLQN DPELDGVDVL IFDEFHERSI HADTALALAL EVQSALREDL KIVVMSATLD QQALQNLLPQ ASYVESQGRG FPIEIRYQPL RSDEPLVAAM QRQIRHLLQH ETGSLLAFLP GAASINQLTE QLSDLASEVE ICPLYGQMEF AAQQRAIAPT AAGMRKVVLA TNIAETSLTI EGIRIVLDSG LERSARFDLK TGITRLEQVR IAQSSAEQRA GRAGRLEPGI CVRLYSEAQL KQQPWVSEPE MLHTDLAPLA LELAQWGAQP SDLAWLNLPP SSAFAQAQQL LQRLGLLDAR TQLTAAGKEA HLLGVEPRIA AMLLSADRLG ESALQSALAL AVLLEEPERQ VIDVQHSLHR WQQGRHPKQK LLIQRAQSLA HKLDTAFSLS SVDSTWLPLV ACLAFPDRIA QQRGQQTGQF LLANGHGAWL AVEERLSAAD YLVALDLMRG QTQASQIFSA LELDIHALER LLPALISRVE QVDWDEKAGR LSAEAQWRID QLVLRREKLP EPDKQKMTQA LLSYVRRKGL TVLQWSEDAS EWLARARCAA EWLPEEAWPA LDDETLLARL ELWLEPYLAG VTSVKGLQSV SVLQALKHYL GWELSQQLDE WLPTHHLLPT GNHKKIRYQL GMEPTLSVRM QEVFGEQSSP RVAKGTRAVV MELLSPAQRP LQVTRDLASF WAGAYKEVQK EMKGRYPKHV WPDDPANHVA TSKTKRQLNA
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