| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0121 |
|---|
| Symbol | |
|---|
| ID | 5136107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 108634 |
|---|
| End bp | 109404 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640531581 |
|---|
| Product | putative permease |
|---|
| Protein accession | YP_001216086 |
|---|
| Protein GI | 147674111 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.228328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAAA TTTATTGGAC GGCATTTTGT AGTCTGCTCG GCAAAGAAAT TAACCGGTTT
ACCCGTATTT GGGTGCAAAC TTTGGTTCCA CCCGCCATCA CTATGACGCT GTACTTCATC
ATCTTCGGTA ATTTGATTGG CTCTCGAATC GGCCAGATGA ACGGTTTCAG CTACATGGAG
TACATCGTAC CCGGTCTCAT TATGATGTCG GTGATCACCA ACTCTTATTC CAATGTGGCA
TCCTCTTTCT TTAGCTCTAA GTTTCAAAAG AACATTGAAG AGCTGTTAGT CGCTCCTGTG
CCAAACTATG TGATTATCGC AGGTTACGTG ATGGGCGGCG TCGCGCGTGG ATTGTTGGTG
GGGGCTATGG TGACAGCGGT TTCACTATTG TTTGTCGATT TGCAGGTCGA TCATTGGGGC
ATCATTATTG CGACGGTATT TTTAACCTCG GTGGTGTTTT CACTCGGTGG ATTGATTAAC
GCGGTGTTTG CCAAAACGTT TGATGATATC TCAATTGTTC CGACCTTCGT GCTGACGCCG
CTGACTTACC TTGGTGGGGT ATTTTATTCG ATTAGCTTGC TGCCGGAGTT TTGGCAAAGT
GTCTCGAAGA TCAATCCGAT TGTCTACATG GTCAATGCGT TCCGCTACGG TTTCCTTGGC
GTGTCGGATG TGGATATCAT GACTTCGTTT GCAGTGTTAA TGGCATTTGT GGTGGCGCTG
TACTGTGTGG CGCATTATTT AGTGACCAAA GGCAAAGGGC TGCGCAGCTA A
|
|---|
| Protein sequence | MYQIYWTAFC SLLGKEINRF TRIWVQTLVP PAITMTLYFI IFGNLIGSRI GQMNGFSYME
YIVPGLIMMS VITNSYSNVA SSFFSSKFQK NIEELLVAPV PNYVIIAGYV MGGVARGLLV
GAMVTAVSLL FVDLQVDHWG IIIATVFLTS VVFSLGGLIN AVFAKTFDDI SIVPTFVLTP
LTYLGGVFYS ISLLPEFWQS VSKINPIVYM VNAFRYGFLG VSDVDIMTSF AVLMAFVVAL
YCVAHYLVTK GKGLRS
|
|---|
| |