Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0075 |
Symbol | csrA |
ID | 5135154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 71375 |
End bp | 71572 |
Gene Length | 198 bp |
Protein Length | 65 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640531535 |
Product | carbon storage regulator |
Protein accession | YP_001216048 |
Protein GI | 147674619 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000000905817 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTATTT TGACTCGCCG TGTTGGCGAA ACCCTGATGA TCGGTGACGA AGTGACCGTG ACAGTATTAG GTGTAAAAGG TAACCAAGTC CGTATCGGTG TAAACGCACC GAAAGAAGTG TCTGTGCACC GTGAAGAAAT CTACATGCGC ATTCAAGCTG AAAAAGGTAA TGGTGGCGTT GCGTCTGGCA ACTACTAA
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Protein sequence | MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYMR IQAEKGNGGV ASGNY
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