Gene VC0395_A0072 details

Gene Information

• Locus tag: VC0395_A0072
• Symbol: alaS
• ID: 5136403
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 67310
• End bp: 69892
• Gene Length: 2583 bp
• Protein Length: 860 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640531532
• Product: alanyl-tRNA synthetase
• Protein accession: YP_001216045
• Protein GI: 147675089
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0013] Alanyl-tRNA synthetase
• TIGRFAM ID: [TIGR00344] alanine--tRNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.163524
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTATGA GCACGGATGA GGTGCGCCGC GCGTTCCTCT CATTCTTTGA AAGCAAAGGT 
CACCAAATTG TAGAAAGTTC TTCTCTGGTG CCTGCTAACG ATCCGACCCT GCTGTTTACC 
AACGCAGGGA TGAACCAATT TAAAGACTGT TTCTTGGGCT TGGAAAAGCG CGCCTACACT 
CGCGCCACGA CCGCTCAACG TTGTGTCCGC GCGGGCGGTA AGCACAACGA CCTAGAAAAC 
GTCGGTTTCA CCGCACGTCA CCACACTTTC TTCGAAATGC TGGGTAACTT CAGTTTCGGT 
GACTATTTCA AAGAAGATGC GATCCAGTAT GCATGGGAGT TTCTGACTGA CGTTCTGCAA 
CTGCCGAAAG AGCGCTTGCT TGTGACGGTT TATGAAACCG ATGATGAAGC CTTTGATATT 
TGGAATAAAA AAGTCGGCAT TCCTGCTGAT CGCATTATTC GTATCGGCGA TAAAAAAGGC 
GGCAAGAAGT TCGATTCGGA TAACTTCTGG CAGATGGGTG ACACTGGTCC TTGCGGTCCA 
TGTACTGAAA TCTTCTACGA CCACGGTGAC CACATTTGGG GTGGACCTCC AGGCTCACCT 
GAGGAAGATG GCGATCGTTT TATCGAAATC TGGAACAACG TTTTCATGCA GTTCAACCGT 
CATGCGGATG GCACGATGGA GCCGCTACCT AAGCCGTCTG TGGACACGGG CATGGGTATT 
GAGCGTATTT CCGCGATCAT GCAAGGCGTG CACTCCAACT ACGAAATCGA CGTATTCCAA 
ACGCTGATCA AAGCAGCCGC AGACGCAATT GGTTACCAAG ATCTGACTAA TCAGTCTCTG 
CGCGTTGTCG CGGATCACAT CCGTTCATGT GCCTTTTTGA TTGTGGATGG CGTGATGCCG 
TCTAACGAAG GTCGTGGTTA TGTACTGCGT CGTATCATTC GTCGTGCCGT TCGTCATGGC 
AATAAGCTCG GTGCGCAAGG TGCATTCTTC CACAAGTTGG TGGGACCATT GGCGGAAGTG 
ATGGGTACTG CAGGCGTTGA GCTGAAAAAG CAGCAAGCTC TGGTTGAAAA AGTGCTACGT 
ATCGAAGAAG AAAACTTTGG ACGTACGCTG GATCGCGGCA TGAGCATTCT GAATGACGCG 
CTGGATCAAC TATCAGGCCA AGTGCTGGAT GGTGAAACCG TCTTCAAACT CTACGACACC 
TACGGCTTCC CTGCGGATTT AACCAATGAT GTGGCGCGTG AGCGTGGCTT TAGCATTGAT 
GAAGCGGGTT TTGAACAAGC GATGGAAGAG CAGCGTCAAC GCGCTCGTGA GGCCGGCCAA 
TTTGGTACGG ACTATAATTC GCTGATCAAA TCCGCCACCA ATACCGAATT CTGCGGTTAC 
ACGGCGAGTC GTGGCCAAAG TGTGGTACGC GAAATGTTCG TGGAGGGCGC GGAAGTTTCT 
ACGCTGTCAG CCGGTGATAA AGCCATCATC GTACTAGACA ACACGCCATT CTACGCAGAA 
TCAGGTGGTC AATGCGGCGA TACTGGCGTT TTGAAAACCG ACGCAGGTAT TTTCCATGTT 
GAAGATACTC AAAAATTAGG TAACGCGATT GCGCATCACG GTGTGCTCGC CCAAGGCGTA 
TTGGCGACAG GCGATCAGGT GGATGCCATC GTCGATGAAA AGCGCCGTGC GGCAATTTCG 
CTGAACCACT CGGCGACTCA CTTGTTGCAT GCTGCACTAC GTAAAGTGCT GGGTGAACAC 
GTGGCGCAGA AAGGCTCTCT AGTGCGTGCT GAAACACTGC GTTTTGACTT CTCACATCTG 
GAAGCGATGA CCGCTGCAGA GATTAAAGAA GTAGAACGTT TAGTGAACCA AGAAGTTCGT 
CGTAACCACA GTATCGAAAC CAACATCATG AATATTGATG AAGCGAAAGC GAAAGGTGCG 
ATGGCGCTGT TTGGTGAGAA ATATGATGAC CAAGTGCGCG TGCTGTCGAT GGGCGACTTC 
TCAACTGAGC TGTGTGGTGG TATCCACGCG AGCAACACGG GTGATATTGG TCTGTTTAAG 
ATCATCTCTG AAGGTGGTAT TGCTGCGGGT ATTCGCCGTA TTGAAGCGGT GACTGGTGAA 
GGCGCATTAG ATTACCTCGA CGCACAGCAA GCACAGCATG ATGCCAAAGT GTCTGAAATG 
GCGGCAAAAG CCAAACTGCT GGAGAAAGAG ATCCAACAGT TGAAAGATAA GCTGGCGGCG 
AAAGAGAGCG CGGGTCTTAT CAACCAAGTT AAGCAGATCG CGGGTGTTAA CGTACTGGTT 
GCGCAGCTCA ACGGTGCAGA CAACAAAGCG CTACGTGGCA TGGTAGATGA TCTCAAAAAC 
CAATTAAGCA GCGGCATCAT CATGCTGGGT AATGTGGCTG AAGGCAAAGT TGGCCTAATT 
GCGGGCGTAA CCAACGATTT GACTAATAAA GTCAAAGCGG GTGAGCTGGT CAACATGGTC 
GCACTACAAG TCGGTGGTAA GGGTGGTGGC CGCCCTGACA TGGCTCAAGC TGGAGGGACA 
GATGCTCACG CTCTGCCATC GGCCTTAGAG TCTGTCGACG CTTGGATTGC CGAGCGTCTA 
TAA 

 

Protein sequence

MFMSTDEVRR AFLSFFESKG HQIVESSSLV PANDPTLLFT NAGMNQFKDC FLGLEKRAYT 
RATTAQRCVR AGGKHNDLEN VGFTARHHTF FEMLGNFSFG DYFKEDAIQY AWEFLTDVLQ 
LPKERLLVTV YETDDEAFDI WNKKVGIPAD RIIRIGDKKG GKKFDSDNFW QMGDTGPCGP 
CTEIFYDHGD HIWGGPPGSP EEDGDRFIEI WNNVFMQFNR HADGTMEPLP KPSVDTGMGI 
ERISAIMQGV HSNYEIDVFQ TLIKAAADAI GYQDLTNQSL RVVADHIRSC AFLIVDGVMP 
SNEGRGYVLR RIIRRAVRHG NKLGAQGAFF HKLVGPLAEV MGTAGVELKK QQALVEKVLR 
IEEENFGRTL DRGMSILNDA LDQLSGQVLD GETVFKLYDT YGFPADLTND VARERGFSID 
EAGFEQAMEE QRQRAREAGQ FGTDYNSLIK SATNTEFCGY TASRGQSVVR EMFVEGAEVS 
TLSAGDKAII VLDNTPFYAE SGGQCGDTGV LKTDAGIFHV EDTQKLGNAI AHHGVLAQGV 
LATGDQVDAI VDEKRRAAIS LNHSATHLLH AALRKVLGEH VAQKGSLVRA ETLRFDFSHL 
EAMTAAEIKE VERLVNQEVR RNHSIETNIM NIDEAKAKGA MALFGEKYDD QVRVLSMGDF 
STELCGGIHA SNTGDIGLFK IISEGGIAAG IRRIEAVTGE GALDYLDAQQ AQHDAKVSEM 
AAKAKLLEKE IQQLKDKLAA KESAGLINQV KQIAGVNVLV AQLNGADNKA LRGMVDDLKN 
QLSSGIIMLG NVAEGKVGLI AGVTNDLTNK VKAGELVNMV ALQVGGKGGG RPDMAQAGGT 
DAHALPSALE SVDAWIAERL