Gene VC0395_A0060 details

Gene Information

• Locus tag: VC0395_A0060
• Symbol: pcm
• ID: 5137402
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 53882
• End bp: 54508
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640531520
• Product: protein-L-isoaspartate O-methyltransferase
• Protein accession: YP_001216033
• Protein GI: 147675360
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG2518] Protein-L-isoaspartate carboxylmethyltransferase
• TIGRFAM ID: [TIGR00080] protein-L-isoaspartate(D-aspartate) O-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 57
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAACC CAAAAGCCGA CAGACTGATT CAATTTTTAA CTGAGCAGGG GATTACCTCA 
CCACAAGTGT TGGCGGCAAT CCATGCACTG CCACGCGAGT TTTTCGTCGC ACCGGCCATG 
ATGCATCAAG CTTATGACAA TAATGCCCTG CCCATAGGTC AAGGCCAGAC CATCTCGCAA 
CCCTATATCG TGGCGAAGAT GACAGAGCTA CTGGCGTTAA CCCCAGAAAC CAAAGTGCTA 
GAAATTGGTA CGGGCTCTGG TTATCAAACC GCAGTGCTCG CCAAACTGGT TAATCATGTG 
TTTACTGTTG AGCGGATCAA AACCCTGCAA TGGGATGCGA AAAGACGCTT GAAACAGTTG 
GATATCTATA ACGTGTCGAC GAAACATGGC GATGGCTGGC AAGGTTGGCC CGCTCGTGGA 
CCTTTTGATG CGATCCTTGT GACGGCTGCT GCGGCAAAAG TGCCGCAAAG TCTATTGGAT 
CAGCTTGCTG AGGGTGGTCG TATGGTGATC CCTGTGGGCG AAGACGAGCA ATATCTGTAC 
AAAATTGTGC GTCAAGGTGG GCAGTTTATC TCTGAGCGGG TTGAAGCTGT GCGTTTTGTG 
CCACTGGTCG CGGGAGATCT TGCCTGA 

 

Protein sequence

MANPKADRLI QFLTEQGITS PQVLAAIHAL PREFFVAPAM MHQAYDNNAL PIGQGQTISQ 
PYIVAKMTEL LALTPETKVL EIGTGSGYQT AVLAKLVNHV FTVERIKTLQ WDAKRRLKQL 
DIYNVSTKHG DGWQGWPARG PFDAILVTAA AAKVPQSLLD QLAEGGRMVI PVGEDEQYLY 
KIVRQGGQFI SERVEAVRFV PLVAGDLA