Gene VC0395_A0044 details

Gene Information

• Locus tag: VC0395_A0044
• Symbol: rpoD
• ID: 5136802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 41202
• End bp: 43067
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640531504
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001216017
• Protein GI: 147674012
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.00416651
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCAAA ATCCGCAGTC ACAGCTTAAA CAACTTGTCC TTCGCGGCAA GGAACAGGGC 
TATCTGACCT ACGCCGAAGT AAATGACCAC TTGCCTGCTG AAATCGTTGA TTCAGAGCAG 
GTGGAAGATA TTATTCAGAT GATTAATGAC ATGGGCATTA AGGTGGTGGA AACCGCACCT 
GATGCCGATG ATCTTGCCCT CAGCGATGAT ACTACCATCA CTGACGAAGA TGCTGCTGAA 
GCAGCCGCCG CGGCACTTTC TAGCGTAGAG AGTGAGATTG GCCGCACCAC CGATCCAGTA 
CGTATGTATA TGCGTGAAAT GGGTACGGTT GAGCTTTTGA CACGTGAAGG TGAAATCGAT 
ATTGCCAAGC GCATTGAAGA TGGTATTAAC CAAGTTCAAA GTGCGATTGC TGAGTATCCT 
GGAACCATCC CTTATATTCT TGAGCAGTTT GATCGTGTTC AGGCCGAAGA GCTACGTCTC 
ACTGACCTGA TTTCAGGTTT CGTTGACCCT AACGACATGG AAACCGAAGC GCCAACCGCG 
ACTCACATCG GTTCTGAGCT TTCTGAAGCG GATCTCGCGG ATGAAGATGA TGCTGTCGTC 
GAAGATGAAG ACGAAGATGG CGACGGTGAA AGCAGCGACA GCGAAGAAGA AGTCGGTATC 
GACCCTGAAC TGGCTCGTGA GAAATTCAAT GAACTGCGCG GTAAGTTCCA AAACCTGCAA 
TTAGCGGTTA ATGAATTTGG TCGTGACAGT CATCAAGCTT CTGAAGCGTC AGACTTAGTG 
CTGGATATCT TCCGTGAATT CCGCCTAACA CCAAAGCAAT TCGACCACTT GGTTGAAACT 
CTGCGCACTT CAATGGATCG TGTTCGCACC CAAGAACGTT TGGTAATGAA AGCGGTAGTT 
GAAGTCGCGA AGATGCCGAA GAAATCGTTC ATCGCCCTAT TTACAGGCAA TGAATCGAAT 
GAAGAGTGGC TGGATAAAGT CCTTGCTTCT GACAAGCCTT ACGTAGCGAA AGTCCGTGAG 
CAAGAAGAAG AGATCCGCCG TTCAATTCAG AAACTACAAA TGATCGAGCA AGAGACATCA 
CTGTCTGTTG AACGCATCAA AGACATCAGC CATCGTATGT CAATCGGTGA GGCGAAAGCT 
CGCCGTGCGA AGAAAGAGAT GGTTGAAGCA AACTTACGTC TGGTAATTTC GATTGCTAAG 
AAATACACCA ACCGTGGTCT GCAATTCTTG GATCTGATCC AAGAAGGTAA CATCGGTTTG 
ATGAAAGCCG TCGATAAGTT TGAATACCGT CGTGGTTATA AATTCTCAAC TTATGCGACT 
TGGTGGATCC GTCAGGCAAT CACTCGTTCT ATTGCTGACC AAGCACGTAC GATTCGTATT 
CCAGTACACA TGATCGAGAC GATCAATAAA CTGAATCGAA TTTCGCGCCA AATGCTGCAA 
GAGATGGGTC GTGAGCCACT GCCTGAAGAA TTGGCAGAAC GCATGCAAAT GCCAGAAGAC 
AAAATCCGCA AAGTGCTGAA AATTGCCAAA GAACCCATCT CCATGGAAAC ACCGATTGGT 
GATGATGAAG ATTCGCATCT GGGTGATTTT ATCGAGGATA CCACCCTCGA GCTGCCACTG 
GATTCTGCGA CCGCAACCAG CCTTAAAGCT GCCACTCGCG ATGTATTAGC AGGCCTAACA 
CCTCGTGAAG CGAAAGTGCT ACGTATGCGT TTCGGTATCG ATATGAATAC CGACCATACT 
CTGGAAGAAG TGGGCAAGCA GTTTGATGTA ACTCGTGAAC GTATTCGTCA GATTGAAGCA 
AAAGCACTGC GTAAACTGCG TCATCCAAGC CGCTCAGAAG TTCTGCGCAG CTTCTTGGAT 
GAATAA 

 

Protein sequence

MDQNPQSQLK QLVLRGKEQG YLTYAEVNDH LPAEIVDSEQ VEDIIQMIND MGIKVVETAP 
DADDLALSDD TTITDEDAAE AAAAALSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID 
IAKRIEDGIN QVQSAIAEYP GTIPYILEQF DRVQAEELRL TDLISGFVDP NDMETEAPTA 
THIGSELSEA DLADEDDAVV EDEDEDGDGE SSDSEEEVGI DPELAREKFN ELRGKFQNLQ 
LAVNEFGRDS HQASEASDLV LDIFREFRLT PKQFDHLVET LRTSMDRVRT QERLVMKAVV 
EVAKMPKKSF IALFTGNESN EEWLDKVLAS DKPYVAKVRE QEEEIRRSIQ KLQMIEQETS 
LSVERIKDIS HRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL 
MKAVDKFEYR RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ 
EMGREPLPEE LAERMQMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDTTLELPL 
DSATATSLKA ATRDVLAGLT PREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA 
KALRKLRHPS RSEVLRSFLD E