| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1004 |
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| Symbol | prtV |
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| ID | 5134184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 979363 |
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| End bp | 982119 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531326 |
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| Product | protease |
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| Protein accession | YP_001215840 |
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| Protein GI | 147671484 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4412] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000922392 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGA TCAAAAAAAC GCTATTAGCT GCCGCCATAG CCAGTTTTTT CAGCAGTGGA
TTATACGCTC AAACACCCAT TGATTTAGGC GTGGTGAATG AGGATAAATT AATTGAAATG
TTAGTCCGCA CCGGACAAAT TCCTGCCGAT GCCTCTGACG TTGATAAACG TATTGCGCTA
GAACGTTATC TGGAGGAGAA AATTCGCTCC GGATTCAAAG GTGATGCGCA ATTTGGTAAG
AAAGCGCTCG AGCAGCGTGC GAAAATTCTT AAAGTGATCG ATAAGCAAAA AGGCCCGCAC
AAGGCGCGTG TTTTTGCTTT AGATGTTGGT CAAAAGCGCA CGGACAAAGT GCTCGCGCTA
TTGATCGATT TCCCCGATCT CCCTTGGGAT GATAACCGCC TGACGAAAGA GCATACTGAG
ATGCTCTACG ATCGTTATGA GCCTTCTCAC TACCAAGATT TGCTGTTCTC GGACAAAGGC
TATACCGGTC CAAACGGTGA AAACTTTATC TCAATGCGTC AATATTACGA GAGTGAATCT
GGCAACAGCT ACAGTGTCTC CGGCCAAGCA GCAGGATGGT ATCGTGCCTC AAAAAATGCG
GCTTATTACG GTGGCAACTC TCCCGGTACC AACAATGATA TGAATGCTCG GGAGCTGGTT
CGCGAAGCAC TGGATCAACT TGCGCGCGAT CCAAACATTA ACCTTGCCGA TTACGATATC
GAAGATCGCT ATGACTACAA CGGTAACGGT AATTTCCGTG AGCCAGATGG CGTGATAGAT
CACTTGATGA TTTTCCATGC CTCTGTGGGT GAAGAAGCGG GTGGCGGTGT GTTGGGCGCG
GATGCGATTT GGTCACACCG TTTTAACCTC GGCCGTTACC ATGTTCTTGA AGGCACGAAA
AGCAACGTTC CTGGACGCTT CAATGGCCAA TTCGCTGCCT TTGATTACAC CATTCAACCG
ATTGATGCGG CTGCCGGCGT GTGTGCCCAC GAATATGGTC ACGATTTAGG TCTGCCCGAT
GAATATGACA CCCAGTACAC AGGTACGGGA GAGCCCGTCT CTTATTGGTC AATCATGTCA
TCTGGCAGCT GGGCGGGCAA AATTGGCGGT ACACAGCCCA CGGCTTTCAG TTCATGGGCT
AAGCAGTTCT TACAAAATTC GATTGGCGGA CGCTGGATTA ACCATGAGCA GCTTTCGATT
AATGAGTTAG AAGCCAAACC GCGCGTGGTT ACGCTATTCC AAACCACAGA TAACTCACGC
CCGAACATGG TGAAAGTGAC TCTGCCGATG AAACGGGTTG AAGGCATTAA GCCTGCAGAA
GGTGAGTTCT CCTTCTACTC GAACCGTGGC GATGATCTGA AAAACCGAAT GAGCCGTCCA
TTGACGATCC CAGCAGGCAG CCAAGCCACG TTGCGCTTTA AAGCGTGGTT CCAGATTGAA
AAAGATTACG ACTACGCGCG TGTGCTGATT AACGGCAAAC CGATTGCCGG TAATATCACG
ACGATGGATG ATCCGTTTAA ATCAGGTTTA GTACCTGCCA TCTCAGGCCA ATCTGATGGC
TGGGTAGATG CGCAATTTGA TCTCTCTGCT TGGGCAGGCC AAACCGTTGA ACTGGCATTT
GATTACTTGA CGGATGGCGG TCTGGCCATG GAAGGTCTGT ATGTCGATGA CTTACGTCTT
GAGGTGGATG GCAATCAGAC CTTGATCGAT AACGCAGAAG GCACATCCAG CTTTGCGTTC
CAAGGTTTCA CCAAAAACGG TGGCTTCCAC GAAGCCAATC ACTATTACTT GCTGCAATGG
CGCAGCCATA ATGACGTTGA CCAAGGCTTA GCCAATTTGA AACGCTTCGG GCAACTGATG
TCATTCGAGC CGGGCTTGCT GGTGTGGTAT GTGGACGAAT CTTACGCGGA TAACTGGGTT
GGCAAACATC CGGGTGAAGG CTGGCTAGGC GTGGTCGATG CCGACCAAAA TGCCTTGGTC
TGGTCAAAAA CAGGGGAAGT GGCACAAACG CGTTTCCAAG TGCGTGATGC AACCTTCTCA
CTGTTTGATC AAGCGCCGCT CAAACTGGTC ACGGCTGATG GCAATACGCT GGAAGATATG
AACTTAACCG CGAATGCCTC GTTCTCGGAC GATCAAGATT ACAGCTCGCC TCAAGCTCCA
GATTCTGGCC GCAAAGTGAT GCCATTTGGT TTGAAGATCG ACCTGCTCTC ACAAAGTAAA
GAGAATGAGT ACGGTGTTGT TCGCTTGTCG AAAGTCACCA CGGAAAATAT CGCGCCTGTG
GCTCGCTTTG AACTGAAAGT CGAGGGGCTC TCTGTGATGT CACAAAACAC CAGTAGTGAT
AGCGATGGCA ATATCGTCAG TTATTTGTGG GATTTTGGTA ACGGTCAAAC CAGTACCGAA
GCCGCTCCAA CTTGGTCATA TACCAAAGCA GGCAGTTACT CTGTCACTTT AACGGTGACG
GATGACAAAG GCGATAGCGA TACTCATCAG CAAACCATTA AAGTGGACAC ACCGAATGCG
TTACCACAAG CCAGTGCCAA CTATATCCAT TTAGGTCGCT GGGTCACCAT GTGGTCAACC
AGCACCGACA GTGATGGCCG CATTGTCGAC ACCGAATGGA CACTGCCGAA TGGTAAAATT
AAGCGGGGTC GTATGTTTAC TGCGATTTTC CCAAGCTATG GGCACCATGA TGTGCAGCTC
AAAGTGATGG ATGACCGCGG CGCAGTCACC ACCATCACCA TCAAAGTCAA ACTGTAA
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| Protein sequence | MKTIKKTLLA AAIASFFSSG LYAQTPIDLG VVNEDKLIEM LVRTGQIPAD ASDVDKRIAL
ERYLEEKIRS GFKGDAQFGK KALEQRAKIL KVIDKQKGPH KARVFALDVG QKRTDKVLAL
LIDFPDLPWD DNRLTKEHTE MLYDRYEPSH YQDLLFSDKG YTGPNGENFI SMRQYYESES
GNSYSVSGQA AGWYRASKNA AYYGGNSPGT NNDMNARELV REALDQLARD PNINLADYDI
EDRYDYNGNG NFREPDGVID HLMIFHASVG EEAGGGVLGA DAIWSHRFNL GRYHVLEGTK
SNVPGRFNGQ FAAFDYTIQP IDAAAGVCAH EYGHDLGLPD EYDTQYTGTG EPVSYWSIMS
SGSWAGKIGG TQPTAFSSWA KQFLQNSIGG RWINHEQLSI NELEAKPRVV TLFQTTDNSR
PNMVKVTLPM KRVEGIKPAE GEFSFYSNRG DDLKNRMSRP LTIPAGSQAT LRFKAWFQIE
KDYDYARVLI NGKPIAGNIT TMDDPFKSGL VPAISGQSDG WVDAQFDLSA WAGQTVELAF
DYLTDGGLAM EGLYVDDLRL EVDGNQTLID NAEGTSSFAF QGFTKNGGFH EANHYYLLQW
RSHNDVDQGL ANLKRFGQLM SFEPGLLVWY VDESYADNWV GKHPGEGWLG VVDADQNALV
WSKTGEVAQT RFQVRDATFS LFDQAPLKLV TADGNTLEDM NLTANASFSD DQDYSSPQAP
DSGRKVMPFG LKIDLLSQSK ENEYGVVRLS KVTTENIAPV ARFELKVEGL SVMSQNTSSD
SDGNIVSYLW DFGNGQTSTE AAPTWSYTKA GSYSVTLTVT DDKGDSDTHQ QTIKVDTPNA
LPQASANYIH LGRWVTMWST STDSDGRIVD TEWTLPNGKI KRGRMFTAIF PSYGHHDVQL
KVMDDRGAVT TITIKVKL
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