| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0985 |
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| Symbol | araD |
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| ID | 5133979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 961398 |
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| End bp | 962090 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640531307 |
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| Product | L-ribulose-5-phosphate 4-epimerase |
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| Protein accession | YP_001215821 |
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| Protein GI | 147671503 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTACAGCG AACTGAAACA GCGCGTATTC AACGCCAATC TCAAATTGCC CAAATACGGC
TTAGTGACTT TTACTTGGGG CAATGTGTCG GAAATTGACC GCGAACGCGG CGTACTGGCG
ATTAAACCGA GCGGCGTCGA ATACGATGCG ATGTGCGCCG AAGATATGGT GATTGTCGAC
CTCACGGGCA AAGTGGTGGA AGGCAAATTG AACCCATCGA GCGATACCGC AACCCATATT
GAACTTTACC GCGCCTTTCC CGACATCGGC GGCGTAGTGC ACACCCATTC GCGCAGCGCC
ACGATTTGGG CTCAAGCGGG CATTGATATT CCCGCGCTCG GGACAACCCA TGCTGATTAC
TTTTACGGCG ACATTCCCTG CACGCGTAAG CTTTCGCACA GCGAAATTGC TGGTGAGTAT
GAAAAAAACA CCGGCCTAGT GATCGTCGAA GAGTTTCGTC ATCGTCATAT CGATCCGATG
GCGGTACCGA GTGTGATTGT GGCCGGACAC GCGCCTTTCT CTTGGGGCAA AAATGCCGAA
GATGCGGTGC ACAACGCCGT GGTGCTGGAA GAGATCTCCG CAATGGCACT CGCCACTCGC
TCGCTCAATA GCGGCATCAA AATTCAGCCC GAATTGTCCG ATAAACACTA CCTGCGCAAA
CACGGCGCGA ACGCTTACTA CGGCCAGAGG TAA
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| Protein sequence | MYSELKQRVF NANLKLPKYG LVTFTWGNVS EIDRERGVLA IKPSGVEYDA MCAEDMVIVD
LTGKVVEGKL NPSSDTATHI ELYRAFPDIG GVVHTHSRSA TIWAQAGIDI PALGTTHADY
FYGDIPCTRK LSHSEIAGEY EKNTGLVIVE EFRHRHIDPM AVPSVIVAGH APFSWGKNAE
DAVHNAVVLE EISAMALATR SLNSGIKIQP ELSDKHYLRK HGANAYYGQR
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