Gene VC0395_0942 details

Gene Information

• Locus tag: VC0395_0942
• Symbol: thrS
• ID: 5134723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: -
• Start bp: 917680
• End bp: 919608
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640531264
• Product: threonyl-tRNA synthetase
• Protein accession: YP_001215778
• Protein GI: 147671507
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000000484442
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTATTA TTACTCTTCC TGACGGTAGT CAGCGTCATT TTGACAACCC AGTATCTACT 
CTCGAAGTTG CCCAATCTAT CGGTCCTGGT CTTGCGAAAG CAACTATTGC AGGTCGTGTG 
AATGGTGCGC GCGTTGATGC TTGCGATCTG ATTGAACACG ATGCCAGCCT AGAAATCATC 
ACCACGAAAG ATGAAGTAGA TGGTTTGGAA ATCGTGCGTC ACTCATGCGC GCACTTGCTT 
GGCCACGCGC TTAAGCAACT TTACCCGAAT GCGAAAATGG CGATCGGTCC AACCATTGAC 
AGCGGTTTTT ACTACGACAT CGATCTCGAG CAGTCTCTCT CTCAAGAAGA TCTTGAGAAA 
ATCGAAGCTC GCATGGTTGA GTTAGCGAAA ACCAAATACG CGGTTGTCAA AAAGAAAGTG 
AGCTGGCAGG AAGCGCGCGA TACCTTTGAA TCGCGTGGCG AAAGCTACAA AATGGAAATT 
CTTGATGAAA ACGTGGCGCG TGATGATCGC CCTGGTCTTT ACCATCACGA AGAATACATT 
GACATGTGCC GTGGTCCACA CGTACCACAC ATGGGCTTTT GTCAAAACTT CAAATTGCTG 
AACATTGCGG GTGCATACTG GCGTGGTAAC AGCGATAACA AAATGCTGCA ACGTATCTAC 
GGTACAGCGT TCCATGATAA GAAAGCTCTG CAAGCGCATT TAACTCGCCT TGAAGAAGCT 
GCAAAACGTG ACCATCGTAA AATCGGTAAG CAACTTGATC TGTTCCATAT GCAGCAAGAA 
GCACCGGGCA TGGTGTTCTG GCACCACAAC GGTTGGTCAG TCTTCCGTGA GCTGGAAATT 
TTTATTCGTC ATAAATTGAA CGAATACGGT TACCAAGAAG TAAAAGGTCC ATTGATGATG 
GATCGCGTAC TTTGGGAACG TTCAGGTCAC TGGGACAAAT ACGCAGATGC GATGTTCACG 
ACTTCATCAG AAAACCGAGA ATACGCGATC AAGCCGATGA ACTGTCCGGG TCACATCCAG 
ATTTTCAACC AAGGTTTGAA ATCTTACCGT GATCTGCCAT TGCGCATGGC TGAGTTTGGT 
TCCTGTCATC GTAACGAGCC ATCAGGTTCA CTACACGGTA TCATGCGTGT GCGTGGCTTT 
ACTCAAGATG ACGCGCATAT CTTCTGTACT GAAGATCAAA TTCAACAAGA AGTGACTTCG 
TGCATCAAGA TGGTGTATGA CACTTACACG ACTTTTGGCT TCCAAAATAT CGTGGTGAAG 
TTGTCTACTC GCCCTGAAAA GCGCGTGGGT AGCGATGAAA TTTGGGACAA ATCAGAACAA 
GCGCTGATCG ATTCTCTGAA GGCAATGGAC ATTCCATTTG AAATTCAGGA AGGCGAAGGT 
GCGTTCTATG GTCCGAAAAT TGAGTTTACA CTCTACGACT GTTTAGATCG TGCGTGGCAA 
TGTGGTACAG TGCAGCTCGA TTTCAACTTG CCTACACGTT TAGGTGCCAC TTACGTTGGT 
GAAAGCAATG AACGCTTAAT TCCGGTGATG ATCCACCGTG CGATTTTGGG TTCACTTGAA 
CGCTTTATCG GTATTCTGAT TGAAGAATAC GCAGGATTCT TCCCAACTTG GTTGGCGCCA 
GAGCAGGCTG TTGTTGTAAA TATCACGGAT AAACAAGCCG ACTATGCTCA TGAAGTCGCT 
CAAAAGCTAC AAAAATGTGG CATTCGAGCA AAAGCAGACT TGAGAAATGA GAAAATAGGC 
TTTAAAATCC GCGAACACAC TTTGAAGCGT GTTCCGTACA TGTTGGTTTG TGGCGACCAA 
GAGATGGAAG CTGGCGAAAT CGCAGTACGT ACACGTAAAG GTAAAGATCT TGGTAAATTT 
AAATTGGATG ATTTTATTGC ACATATCCAA GCTGAGATTG CAAGCCGTAA GCTTAATCTG 
GAGGAATAA 

 

Protein sequence

MPIITLPDGS QRHFDNPVST LEVAQSIGPG LAKATIAGRV NGARVDACDL IEHDASLEII 
TTKDEVDGLE IVRHSCAHLL GHALKQLYPN AKMAIGPTID SGFYYDIDLE QSLSQEDLEK 
IEARMVELAK TKYAVVKKKV SWQEARDTFE SRGESYKMEI LDENVARDDR PGLYHHEEYI 
DMCRGPHVPH MGFCQNFKLL NIAGAYWRGN SDNKMLQRIY GTAFHDKKAL QAHLTRLEEA 
AKRDHRKIGK QLDLFHMQQE APGMVFWHHN GWSVFRELEI FIRHKLNEYG YQEVKGPLMM 
DRVLWERSGH WDKYADAMFT TSSENREYAI KPMNCPGHIQ IFNQGLKSYR DLPLRMAEFG 
SCHRNEPSGS LHGIMRVRGF TQDDAHIFCT EDQIQQEVTS CIKMVYDTYT TFGFQNIVVK 
LSTRPEKRVG SDEIWDKSEQ ALIDSLKAMD IPFEIQEGEG AFYGPKIEFT LYDCLDRAWQ 
CGTVQLDFNL PTRLGATYVG ESNERLIPVM IHRAILGSLE RFIGILIEEY AGFFPTWLAP 
EQAVVVNITD KQADYAHEVA QKLQKCGIRA KADLRNEKIG FKIREHTLKR VPYMLVCGDQ 
EMEAGEIAVR TRKGKDLGKF KLDDFIAHIQ AEIASRKLNL EE