| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0723 |
|---|
| Symbol | |
|---|
| ID | 5134201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 784580 |
|---|
| End bp | 785257 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640531045 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_001215559 |
|---|
| Protein GI | 147671580 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000000098011 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAT CCATCATTTC AGCGCAATCA CTATCCAAAT TAGTCTCCAC TAATCAGGAG
CATTTAACAA TCCTTAAACA GGTGAATCTC TCGATTCAAG CGGGAGAAAG TGTGGCGATT
GTCGGCGCAT CAGGCGCGGG AAAATCGACG CTGATGACGC TACTGGCGGG GTTAGATACG
CCAAGTGAAG GGGAAGTGTA TCTGTTGGGG AAACCGCTTT CACAACTGGA TGATGAAGCC
CGCGCCGCAC TGCGCAGTGA ATCCGTTGGG TTTGTGTTCC AAAGTTTTCT GCTTATTCCG
AGCCTGTCGG CGCTGGAAAA TGTCACTCTG CCTTGTTTGT TAAAAGGTGA GGCGGAGGAT
CGCGAGCGCG CCCAGAAGCT GCTCAAAGCG GTCGGTTTGG AGCATCGAAT GCACCATTCG
CCCGCACAAT TGTCGGGCGG AGAGCAGCAA CGCGTAGCGA TTGCTCGCGC ATTTATGATA
AGTCCCCAAG TGCTGTTTAC TGATGAGCCA ACGGGCAATT TGGATCAAGA AACAGCTGCA
AAAGTGATTG ATTTACTGTT TGAACTGAAC CGTGAACACG GCACTACACT AGTGCTGGTG
ACGCATGACC CTAAACTCGC GCAGCGTTGT CAGCGACGAT TTTTTATGCA AGCGGGTGAG
CTGGAGGAGC GCGTATGA
|
|---|
| Protein sequence | MQTSIISAQS LSKLVSTNQE HLTILKQVNL SIQAGESVAI VGASGAGKST LMTLLAGLDT
PSEGEVYLLG KPLSQLDDEA RAALRSESVG FVFQSFLLIP SLSALENVTL PCLLKGEAED
RERAQKLLKA VGLEHRMHHS PAQLSGGEQQ RVAIARAFMI SPQVLFTDEP TGNLDQETAA
KVIDLLFELN REHGTTLVLV THDPKLAQRC QRRFFMQAGE LEERV
|
|---|
| |