Gene VC0395_0720 details

Gene Information

• Locus tag: VC0395_0720
• Symbol: ugd
• ID: 5135054
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: -
• Start bp: 780581
• End bp: 781747
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640531042
• Product: UDP-glucose 6-dehydrogenase
• Protein accession: YP_001215556
• Protein GI: 147672268
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1004] Predicted UDP-glucose 6-dehydrogenase
• TIGRFAM ID: [TIGR03026] nucleotide sugar dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0000000875671
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTG CCATTGCAGG AACGGGGTAT GTAGGATTAT CGAATGGAAT ACTGCTTGCT 
CAACACAATG AAGTGGTCGC ATTGGATATC GTGGTCAGCC GAGTAGAGCA GCTCAATGAT 
AAGATTTCAC CGATCGCCGA TCCCGAGATT GAATCTTTTC TACAGCATCA ACCCCTTAAT 
TTTCGAGCGA CTTGCGATAA ACGAGACGCC TACCAAGACG CACAGTTTGT CGTGATCGCC 
ACGCCTACCG ACTATGACCC ACAAACCAAT CATTTTGATA CACGAACCGT GGAAGCGGTG 
ATTGATGATG TGTTGGCGAT CAATCCACAG GCCATCATGG TGATTAAATC CACTGTGCCT 
GTGGGTTACA CCAAACGCAT CAAACAACGG CTCTGCTGTA ACAACCTGAT CTTTTCGCCA 
GAGTTTTTAC GCGAAGGGCG TGCCTTGTAT GACAACTTAT ACCCATCTCG GATCATTGTT 
GGGGAAAAGT CGGAGCGCGG CCAAGCGTTT GCAACCTTGT TGGCTCAGGG GGCAAAGAAA 
ATGGATATTC CGATTTTGTT GACTCACTCG ACCGAAGCTG AAGCGGTCAA GCTTTTCTCG 
AACACCTATC TTGCAATGCG TGTATCGTTT TTTAATGAGT TGGATACGTA CGCGGAAACC 
CATGGGTTAG ACACCAAACA GATCATCGAA GGCGTTGGGT TAGATCCTCG CATCGGTAAT 
CATTACAACA ATCCTTCTTT TGGTTATGGT GGTTACTGCT TGCCGAAAGA CACTCGCCAG 
TTACTGCGCA ATTTTGAGGA TGTACCTAAT AACCTGATCC GTGCGATTGT CGATGCCAAT 
ACCACACGCA AAGACCATAT TGCGTTTTCC ATCTTGAACC GCAACCCGAA AGTGGTTGGT 
ATTTACCGCT TAATCATGAA GTCGGGCTCT GACAATTTTC GAGCTTCATC CATCTTAGGC 
ATCATGAAAC GAATCAAGGC ACAGGGGGTT GAAGTGGTGA TTTACGAACC TGTGCTCAAT 
GAATCGACCT TTTACGGCTC ACCTGTGATT CGCGATCTTG CCCAGTTTAA AGCGATGGCC 
GAGGTGATAG TGACCAATCG CCGGGTGGCT GAGCTGGAGG ATGTCGCGGA AAAAATCTAC 
ACCCGTGACC TGTTTGGTCA GGATTGA 

 

Protein sequence

MKIAIAGTGY VGLSNGILLA QHNEVVALDI VVSRVEQLND KISPIADPEI ESFLQHQPLN 
FRATCDKRDA YQDAQFVVIA TPTDYDPQTN HFDTRTVEAV IDDVLAINPQ AIMVIKSTVP 
VGYTKRIKQR LCCNNLIFSP EFLREGRALY DNLYPSRIIV GEKSERGQAF ATLLAQGAKK 
MDIPILLTHS TEAEAVKLFS NTYLAMRVSF FNELDTYAET HGLDTKQIIE GVGLDPRIGN 
HYNNPSFGYG GYCLPKDTRQ LLRNFEDVPN NLIRAIVDAN TTRKDHIAFS ILNRNPKVVG 
IYRLIMKSGS DNFRASSILG IMKRIKAQGV EVVIYEPVLN ESTFYGSPVI RDLAQFKAMA 
EVIVTNRRVA ELEDVAEKIY TRDLFGQD