Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0554 |
Symbol | mscL |
ID | 5134797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 608061 |
End bp | 608471 |
Gene Length | 411 bp |
Protein Length | 136 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640530876 |
Product | large-conductance mechanosensitive channel |
Protein accession | YP_001215393 |
Protein GI | 147671843 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1970] Large-conductance mechanosensitive channel |
TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.000110723 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTTAC TTAAAGAGTT CAAGGCATTT GCATCTCGTG GCAATGTGAT CGACATGGCA GTCGGTATCA TCATTGGTGC GGCGTTTGGC AAAATAGTGT CATCGTTCGT GGCCGATATC ATTATGCCGC CAATCGGTAT TATTTTAGGT GGTGTGAATT TTAGCGATCT GAGTTTCGTG TTACTTGCCG CGCAAGGTGA TGCCCCTGCT GTAGTGATTG CCTACGGCAA ATTTATCCAA ACCGTGGTCG ATTTTACGAT TATCGCGTTC GCCATTTTCA TGGGTTTAAA AGCGATCAAT AGCTTGAAGC GTAAGGAAGA AGAAGCGCCT AAAGCCCCAC CTGCGCCAAC CAAAGATCAA GAACTGCTTT CTGAAATTCG TGATTTGTTA AAAGCACAGC AAGATAAATA A
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Protein sequence | MSLLKEFKAF ASRGNVIDMA VGIIIGAAFG KIVSSFVADI IMPPIGIILG GVNFSDLSFV LLAAQGDAPA VVIAYGKFIQ TVVDFTIIAF AIFMGLKAIN SLKRKEEEAP KAPPAPTKDQ ELLSEIRDLL KAQQDK
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