Gene VC0395_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0550 
Symbol 
ID5134649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp606084 
End bp606758 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content47% 
IMG OID640530872 
Productnucleotidase 
Protein accessionYP_001215389 
Protein GI147671410 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000223011 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTACG ATTGGATCTT ATTTGACGCT GACGAGACCT TGTTTCATTT CGATGCTTTT 
AAAGGCATGC AGCTGATGTT CGCGCGCAAA GGCGTGGAAT TTACCGAACA AGATTTTCAC
CAATACCAAG AAGTGAATAA ACCGCTGTGG GTGGATTACC AAAACGGCGA TATTACTGCC
GCGCAGCTCA AACATACGCG CTTTGCGGGT TGGGCTGAAA AGCTTAATAC CACCACTGAC
GAGCTTAATA GTGCATTTTT ACAAGCCATG GCGGATATTT GTACCTTGCT ACCGGGCGCG
ATGGAGTTGA TGCAGGCGCT ACAAGGTAAA GCGCGTTTGG GCATTATCAC CAACGGTTTT
ACCGAGCTAC AAGATGTTCG GCTGGCTAAA ACCGGCATGA CTGACTTTTT TGATCAGATT
GTGATTTCTG AAGAAGTCGG GATTGCTAAA CCCGATGCTG GCATTTTTGC CCACGCACTA
GAGCGTATGG GCAACCCAAC CAAAAGCCGA GTGCTGATGG TCGGGGATAA TCCACATTCT
GACATTCTAG GTGGCTTGAA TTTTGGCATC GAAACTTGCT GGCTCAATGT TCATCAGCAC
CCGAAACCAG ATGGCATTAC GCCACATTAT GAAGTGACTT CACTGCATGA ACTGAGAGAG
ATTTTGTTGG CGTAA
 
Protein sequence
MKYDWILFDA DETLFHFDAF KGMQLMFARK GVEFTEQDFH QYQEVNKPLW VDYQNGDITA 
AQLKHTRFAG WAEKLNTTTD ELNSAFLQAM ADICTLLPGA MELMQALQGK ARLGIITNGF
TELQDVRLAK TGMTDFFDQI VISEEVGIAK PDAGIFAHAL ERMGNPTKSR VLMVGDNPHS
DILGGLNFGI ETCWLNVHQH PKPDGITPHY EVTSLHELRE ILLA