Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0550 |
Symbol | |
ID | 5134649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 606084 |
End bp | 606758 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640530872 |
Product | nucleotidase |
Protein accession | YP_001215389 |
Protein GI | 147671410 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E [TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000000000223011 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTACG ATTGGATCTT ATTTGACGCT GACGAGACCT TGTTTCATTT CGATGCTTTT AAAGGCATGC AGCTGATGTT CGCGCGCAAA GGCGTGGAAT TTACCGAACA AGATTTTCAC CAATACCAAG AAGTGAATAA ACCGCTGTGG GTGGATTACC AAAACGGCGA TATTACTGCC GCGCAGCTCA AACATACGCG CTTTGCGGGT TGGGCTGAAA AGCTTAATAC CACCACTGAC GAGCTTAATA GTGCATTTTT ACAAGCCATG GCGGATATTT GTACCTTGCT ACCGGGCGCG ATGGAGTTGA TGCAGGCGCT ACAAGGTAAA GCGCGTTTGG GCATTATCAC CAACGGTTTT ACCGAGCTAC AAGATGTTCG GCTGGCTAAA ACCGGCATGA CTGACTTTTT TGATCAGATT GTGATTTCTG AAGAAGTCGG GATTGCTAAA CCCGATGCTG GCATTTTTGC CCACGCACTA GAGCGTATGG GCAACCCAAC CAAAAGCCGA GTGCTGATGG TCGGGGATAA TCCACATTCT GACATTCTAG GTGGCTTGAA TTTTGGCATC GAAACTTGCT GGCTCAATGT TCATCAGCAC CCGAAACCAG ATGGCATTAC GCCACATTAT GAAGTGACTT CACTGCATGA ACTGAGAGAG ATTTTGTTGG CGTAA
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Protein sequence | MKYDWILFDA DETLFHFDAF KGMQLMFARK GVEFTEQDFH QYQEVNKPLW VDYQNGDITA AQLKHTRFAG WAEKLNTTTD ELNSAFLQAM ADICTLLPGA MELMQALQGK ARLGIITNGF TELQDVRLAK TGMTDFFDQI VISEEVGIAK PDAGIFAHAL ERMGNPTKSR VLMVGDNPHS DILGGLNFGI ETCWLNVHQH PKPDGITPHY EVTSLHELRE ILLA
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