| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0489 |
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| Symbol | |
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| ID | 5134017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 545932 |
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| End bp | 547341 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640530812 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215330 |
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| Protein GI | 147671644 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 0.788627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTTACA AAGGATATGA GCGAATGGAT CATCGCTTTT CGACCAAACT GTTTCTGCTT
CTCATGATTG CTTGGCCGCT TTTATTCGGA TCAATGAGTG AGGCTGTAGA GCGCCAAACC
TTGACTATTG CCAACTCAAA AGCATGGAAA CCCTATTCTT ATTTGGATGA ACAGGGACAG
CCTTCTGGCA TATTGATTGA TTTTTGGTTG GCTTTTGGTG AAGCGAATCA TGTCGATATT
GAATTCCAAC TGATGGATTG GAATGATTCC CTAGAAGCGG TGAAGCTTGG CAAATCCGAT
GTTCAAGCTG GTTTGATCCG TTCTGCTTCA AGATTAGCGT ATCTCGATTT TGCAGAACCT
TTACTGACAA TCGATACACA ACTCTACGTA CACCGCACGT TATTGGGCGA TAAATTGGAT
ACGCTGCTAT CGGGGGCCAT TAACGTCTCA TTAGGTGTAG TAAAAGGGGG ATTTGAACAA
GAGTTCATGC AACGAGAATA TCCTCAACTT AAGTTGATTG AGTACGCCAA CAATGAATTG
ATGATGTCTG CAGCAAAGCG ACGAGAATTA GATGGTTTTG TGGCCGATAC TCAGGTCGCC
AATTTCTATA TAGTGGTTTC CAATGGCGCG AAAGATTTTA CGCCAGTGAA GTTTCTTTAT
TCAGAGGAAT TACGTCCAGC GGTCGCCAAA GGCAATAGGG ATTTATTAGA GCAAGTAGAG
CAGGGGTTTG CACAATTAAG TAGCAATGAG AAAAACCGTA TTTTAAGTCG ATGGGTTCAT
ATTGAAACGA TTTATCCACG TTACTTAATG CCGATTCTCG CTTCAGGTCT CTTACTCAGT
ATCGTTATTT ATACTCTTCA GCTACGGCGT ACCGTTCGAT TGCGAACACA GCAACTTGAA
GAAGCCAATC AAAAACTCTC CTATTTAGCG AAAACGGATA GCTTGACGGA CATTGCTAAT
CGCCGTTCGT TTTTTGAACA TCTTGAAGCG GAACAAACAC GATCAGGCAG CTTAACGTTG
ATGGTTTTTG ATATTGATGA CTTCAAAACC ATTAACGATC GCTTTGGGCA TGGCGCAGGA
GATAATGCCA TCTGTTTCGT GGTTGGGTGT GTGCGACAAG CTTTAGCATC GGATACCTAC
TTTGCAAGGA TTGGTGGTGA AGAGTTTGCT ATTGTAGCGC GTGGTAAAAA TGCAGAAGAG
TCGCAGCAGT TAGCTGAGCG AATTTGCCAA CGAGTTGCAG AAAAAAAGTG GGTAGTGAAT
GCCCAACACT CTCTGTCACT CACCATCAGC CTAGGCTGTG CATTTTACCT ACACCCAGCT
CGGCCATTCA GTTTGCACGA TGCCGATAGC TTAATGTACG AAGGAAAGCG GAATGGAAAG
AACCAGGTTG TCTTTCGTAC CTGGTCATAA
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| Protein sequence | MTYKGYERMD HRFSTKLFLL LMIAWPLLFG SMSEAVERQT LTIANSKAWK PYSYLDEQGQ
PSGILIDFWL AFGEANHVDI EFQLMDWNDS LEAVKLGKSD VQAGLIRSAS RLAYLDFAEP
LLTIDTQLYV HRTLLGDKLD TLLSGAINVS LGVVKGGFEQ EFMQREYPQL KLIEYANNEL
MMSAAKRREL DGFVADTQVA NFYIVVSNGA KDFTPVKFLY SEELRPAVAK GNRDLLEQVE
QGFAQLSSNE KNRILSRWVH IETIYPRYLM PILASGLLLS IVIYTLQLRR TVRLRTQQLE
EANQKLSYLA KTDSLTDIAN RRSFFEHLEA EQTRSGSLTL MVFDIDDFKT INDRFGHGAG
DNAICFVVGC VRQALASDTY FARIGGEEFA IVARGKNAEE SQQLAERICQ RVAEKKWVVN
AQHSLSLTIS LGCAFYLHPA RPFSLHDADS LMYEGKRNGK NQVVFRTWS
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