Gene VC0395_0475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0475 
Symbol 
ID5134384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp530858 
End bp531763 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content46% 
IMG OID640530798 
ProductLysR family transcriptional regulator 
Protein accessionYP_001215316 
Protein GI147671931 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000111111 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGGTATT CATTAAAGCA ATTAGCAGTA TTTGATGCAG TTGCCGATTG TGGCAGTGTC 
AGTCAGGCTG CGGATAAACT GGCGCTCACT CAATCAGCAA CGAGCATGTC TTTAGCTCAG
TTGGAAAAAA TGCTCGGACG TCCTCTGTTT GAAAGACAAG GTAAACAGAT GGCATTAACC
CATTGGGGCA TGTGGCTACG CCCTAAAGCA AAGCGTTTAC TGCAAGATGC CCAGCAGATT
GAAATGGGCT TTTATGATCA ACACCTCTTA AGTGGTGAGA TTCGCTTAGG TGCGAGTCAA
ACCCCGGCGG AACACTTGGT GCCTGATCTC ATCAGTATTA TTGATAGTGA CTTTCCTGAG
ATTCGCATCT CATTGGGCGT GAAAAGTACC AAGGGAGTGA TCGAAGGTGT TCTCGACTAT
AAATACGATC TTGGGATTAT TGAAGGACGC TGCGATGACA ACCGCATCTA TCAAGAGGTA
TGGTGTCGCG ATCACTTAAC GATTGTCGCT TCGGCACATC ATCCATTTGC GAAACGTGAA
TCGGTCAGTC TTGCTCAGCT TGAACAGGCG AAATGGGTTC TGCGCGAGCA AGGTGCAGGG
ACTCGCAATA TTTTTGATAG TGTGATCCAT CCGTTAATCC CAGACTTAGA TGTTTGGCGC
GAATATGAAC ATGTTCCTGT GTTACGCACG TTGGTGGCCA ATGGCCCTTA TTTGACTTGC
CTACCGTATT TGGATGTTGA ACGCTTTATC GAAAGTGGAT TACTGGTTGC ACTGAATGTG
CCGGAGCTCA ATATGGAGCG TACTCTCTCT TTTATTTGGC GTGCAGATAT GGAAGAAAAC
CCGCTGGCTG AGTGCATTAA ACGTGAAGGA TTACGCATGA TGAAAGGAAA ACCGAGCATC
TTATAA
 
Protein sequence
MRYSLKQLAV FDAVADCGSV SQAADKLALT QSATSMSLAQ LEKMLGRPLF ERQGKQMALT 
HWGMWLRPKA KRLLQDAQQI EMGFYDQHLL SGEIRLGASQ TPAEHLVPDL ISIIDSDFPE
IRISLGVKST KGVIEGVLDY KYDLGIIEGR CDDNRIYQEV WCRDHLTIVA SAHHPFAKRE
SVSLAQLEQA KWVLREQGAG TRNIFDSVIH PLIPDLDVWR EYEHVPVLRT LVANGPYLTC
LPYLDVERFI ESGLLVALNV PELNMERTLS FIWRADMEEN PLAECIKREG LRMMKGKPSI
L