Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0475 |
Symbol | |
ID | 5134384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 530858 |
End bp | 531763 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640530798 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001215316 |
Protein GI | 147671931 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000000000111111 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGGTATT CATTAAAGCA ATTAGCAGTA TTTGATGCAG TTGCCGATTG TGGCAGTGTC AGTCAGGCTG CGGATAAACT GGCGCTCACT CAATCAGCAA CGAGCATGTC TTTAGCTCAG TTGGAAAAAA TGCTCGGACG TCCTCTGTTT GAAAGACAAG GTAAACAGAT GGCATTAACC CATTGGGGCA TGTGGCTACG CCCTAAAGCA AAGCGTTTAC TGCAAGATGC CCAGCAGATT GAAATGGGCT TTTATGATCA ACACCTCTTA AGTGGTGAGA TTCGCTTAGG TGCGAGTCAA ACCCCGGCGG AACACTTGGT GCCTGATCTC ATCAGTATTA TTGATAGTGA CTTTCCTGAG ATTCGCATCT CATTGGGCGT GAAAAGTACC AAGGGAGTGA TCGAAGGTGT TCTCGACTAT AAATACGATC TTGGGATTAT TGAAGGACGC TGCGATGACA ACCGCATCTA TCAAGAGGTA TGGTGTCGCG ATCACTTAAC GATTGTCGCT TCGGCACATC ATCCATTTGC GAAACGTGAA TCGGTCAGTC TTGCTCAGCT TGAACAGGCG AAATGGGTTC TGCGCGAGCA AGGTGCAGGG ACTCGCAATA TTTTTGATAG TGTGATCCAT CCGTTAATCC CAGACTTAGA TGTTTGGCGC GAATATGAAC ATGTTCCTGT GTTACGCACG TTGGTGGCCA ATGGCCCTTA TTTGACTTGC CTACCGTATT TGGATGTTGA ACGCTTTATC GAAAGTGGAT TACTGGTTGC ACTGAATGTG CCGGAGCTCA ATATGGAGCG TACTCTCTCT TTTATTTGGC GTGCAGATAT GGAAGAAAAC CCGCTGGCTG AGTGCATTAA ACGTGAAGGA TTACGCATGA TGAAAGGAAA ACCGAGCATC TTATAA
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Protein sequence | MRYSLKQLAV FDAVADCGSV SQAADKLALT QSATSMSLAQ LEKMLGRPLF ERQGKQMALT HWGMWLRPKA KRLLQDAQQI EMGFYDQHLL SGEIRLGASQ TPAEHLVPDL ISIIDSDFPE IRISLGVKST KGVIEGVLDY KYDLGIIEGR CDDNRIYQEV WCRDHLTIVA SAHHPFAKRE SVSLAQLEQA KWVLREQGAG TRNIFDSVIH PLIPDLDVWR EYEHVPVLRT LVANGPYLTC LPYLDVERFI ESGLLVALNV PELNMERTLS FIWRADMEEN PLAECIKREG LRMMKGKPSI L
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