| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0463 |
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| Symbol | ydbK |
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| ID | 5133989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 518230 |
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| End bp | 521469 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640530786 |
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| Product | pyruvate-flavoredoxin oxidoreductase |
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| Protein accession | YP_001215304 |
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| Protein GI | 147672240 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0388301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTGGA TTACTGACGC AAATACGGCC GTTGCCCGCG TTGCTTATCA ACTGAGTGAA
GTGCTAGCCG TCTACCCTAT TACACCGAGC ACCAGCATGG CCGAAAGCTG TGAACAATGG
GCAAGCCAGC AAAAGAGTAA TCTGCTGGGT GATGTACCCA AACTTGTGGA AATGCAGTCG
GAAGCAGGCA GTATTGCGGT TGTTCATGGC GCCGCCATGA GCGGTGCACT TGCCACTACC
TTTACCTCAT CGCAAGGTTT ATTGCTCATG ATCCCAAGCT TATACAAGCT TGCTGGTGAA
CTGACGCCTT GTGTCATTCA TGTGGCGGCT CGGACTGTCG CTACTCATGC GTTATCCATT
TACTGCGATC ATTCGGACGT GATGGCCATC CGCCAAACGG GCGTTGCAAT GCTCTGCGCC
AGTAATGCGC AAGAGGCGCA AGATCTGGCC GCCATTGCCA CTTTCAGTGC TTTACAATGC
CGCTTACCGT TTGTGCATTT CTTTGATGGA TTCCTCACCT CACACGCCAT TACCCAGATT
GAGCCGCTCT CCGAAGAGGC GTTATCTGCA CTGCTACCCA TGCCAGCGTT AGTTGATTTT
CGTGCCCGAG CCTTAACGCC CGACCGGCCA ACTCTACGCG GAGCCACTGC CGATCCCGAC
AGTTACTTTC AGTGTCGCGA GGCTCAAACA CCATACCATC AAAGTACGCC TGAACAGGTG
CAGAACATCA TGAACTGTTT TGAAACACAG ACCGGACGCC GCTACCAGTT GGTCGAGTAT
ATCGGTCATC CGCAAGCACA ATCTGTGATT GTCGCAATGG GATCTTCCGT CGACACCATC
AAACCAGTCG TCCTTGCTGG CGTTCAACAA GGTGAGCGGA TTGGCGTTAT TCAGATCCGA
CTATATCGCC CTTTTCCAAG CCAAGCCTTA CGGGATGCGC TTCCAGCCAC GGTGACTCAT
ATCAGCGTAT TGGATCGCAC CAAAGAGCCG GGCAGTCACG GCGAACCGCT TTATCTTGAC
GTTTTAAGTG CCTTGTATTC CCAGAGGGCA AACTCGATCC GACTCTCTCG CGGTCGCTAT
GGGTTATCAG GAAAAGCGTT TTACCCAGAA GATGTCGAAG CGATTTTCAC CATGATGCAA
GCTCCCGAGC AGGAGCAAAT GCACGAGTTT GTGGTGGGTA TTGAAGATGA CGTAAGCCAA
CTTACTCTAC CGAAAACGAT TTCAGCGACG AGAGACAAGC CCTATCAAAG TGTTCTGATG
TATGGCTATG GCGGCGATGG GAGTGTCAGT GCGGGAAAAA ATCTGATTAA AACCCTAGGC
CAAAACTGGC ATGTACAGGG TCAGTTTGAA TACGACTCCA AAAAATCTGC CAATGTCACC
ACGACACATA TCCGTTTCAG TCAGCAACCG ATCACTGCTC CCTATCCGGT TCGTCACGCT
TGGTTGGTTT CGCTCAGCAA TCTGAAACTT CTCCATGAGC GTGACATTGC CAGCAAGCTG
ATCGCCAATG GCTATCTGTT GCTCAACACC GCACTGACGG GGCAAGCACT GTGGGCCGCT
TTACCGCCCG CATTGCAAAG TCGCCTTCAG GCTTTATCGG TTCAAGTGTC CACCATCGAT
GCCGATGGCT TGATTGAGCG CCATCAACTC GGCAATAAAA CCAGTATTGT GATGCAAGCC
GCGGCGGCTC GATTATTAAG CCAGCATACC GAACAGGCGT TATTGACCTC ACTGGAAGCG
AGTCTAACCG AACAGCTCAA ACACCGTTCA GACCAGCAAC TGACACAAAG CCTGCAATGC
CTGAACCAAG CGTACCAGTC GGTGTGTGAG ATGCCTTTTG CGATCCCAAG TGAAACAACG
ATGGCCATCC AGAGCCAGCC GAAGATTTGG GGCGCGAGCT TGGTTGAACA ACTGCTGGCG
GGGAAAGGCG ATGCGCTACC TGTCTCGGCT TATCCGGCCG ATGGAGTATG GCCTACCAAT
ACTTCGCAGT TAGAAAAGCG CAATCTTGCT GAACAGCTGC CGGTTTGGGA AACCGATCTT
TGCACTCAAT GCGGTTACTG CGTCGCGATT TGCCCGCATT CGGCGATTCG TGCCCGCATT
GTGAGCGAAA CCCATCCCAC CTTGAGTGAG TTAAAAAGCC TGCCTTATCG CTCAAGACAG
CAACCCGATG CGCATTATGT ACTGCAAGTG TCGCCGGATG ACTGTACTGG CTGCCAGTTA
TGCACTCAGG TTTGCCCAGC AAAAGATCGA CAAGAGCCAG AGCGTAAGGC ATTGAATATG
TTTGAGAAGA ACCTCAGTTA TCAGTCAGAG CAACAAAGAT TCACTCATTT CCAAGCCTTG
CCGAAGCAGT CGGCCTATCA GCAGCAGCGA ATTGATGTCA AAACATTGCA GCACGTTGAG
CCCTATTTTG AATACCCGAA TGCCTGTGCA GGATGCGGAG AAACGCCTTA TATCCGTATT
TTGACTCAGT TATTCGGCGA TCGATTGATG ATTGCGAACG CGACAGGCTG CTCCTCAATT
TTTGGCGGCA ATCTACCCAC GACGCCTTAC AGTCAGGATA GTGATGGACG AGGCCCTGCT
TGGGCCAACA GCCTATTTGA GGATAATGCC GAATTTGGCT TGGGCATGAA TATGGCACTG
GAAGCCTTAC AATCGCGTGC GCAGCGTTTG CTAGGCGGAT ATACCCCGCA ATCTCCGCTT
CCCGATCTAA GATCGCAGAT TGCTGAGCTG AAGCAGCGAC TTCCTGCTCA CTCGGAAGAG
CAACTGCTGG CCGATTATTT AAGCGAAAAA ATGGTGTGGA TGATAGGAGG TGACGGCTGG
GCTTATGACA TCGGCTTTGG CGGACTCGAT CATGTGATGC GCAGCGGACG TAACATCAAT
ATTCTGGTTC TGGATACGCA GTGTTACTCC AATACTGGTG GACAAAAATC CAAGTCCACT
CCGCAAGGAC AAACCGCGAA ATTGTGCAGT TTACCCAATC CAAGTCCAGC CAAAGATCTG
GTTAAACTTT ACCAAGATCT GCCCGGTGCG TTTGTAGCGA GAATAGCCTT GGGTGCCAAC
ATCAATCAGA CCATTAAAGC GCTGCAAGCT GCAGGTGAAC ATTCTGGTCC GTCATTGGTT
GTCGCCTATT CGCCCTGCAT CGAGCACCAT TACGATTTGG CACACAGTGC GCAAGTTACA
AAAGAGGTGG TGAAATCTGG CGCATGGCCG CTGTATGCGG GCGTCGCGCA ACAAGATTAG
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| Protein sequence | MTWITDANTA VARVAYQLSE VLAVYPITPS TSMAESCEQW ASQQKSNLLG DVPKLVEMQS
EAGSIAVVHG AAMSGALATT FTSSQGLLLM IPSLYKLAGE LTPCVIHVAA RTVATHALSI
YCDHSDVMAI RQTGVAMLCA SNAQEAQDLA AIATFSALQC RLPFVHFFDG FLTSHAITQI
EPLSEEALSA LLPMPALVDF RARALTPDRP TLRGATADPD SYFQCREAQT PYHQSTPEQV
QNIMNCFETQ TGRRYQLVEY IGHPQAQSVI VAMGSSVDTI KPVVLAGVQQ GERIGVIQIR
LYRPFPSQAL RDALPATVTH ISVLDRTKEP GSHGEPLYLD VLSALYSQRA NSIRLSRGRY
GLSGKAFYPE DVEAIFTMMQ APEQEQMHEF VVGIEDDVSQ LTLPKTISAT RDKPYQSVLM
YGYGGDGSVS AGKNLIKTLG QNWHVQGQFE YDSKKSANVT TTHIRFSQQP ITAPYPVRHA
WLVSLSNLKL LHERDIASKL IANGYLLLNT ALTGQALWAA LPPALQSRLQ ALSVQVSTID
ADGLIERHQL GNKTSIVMQA AAARLLSQHT EQALLTSLEA SLTEQLKHRS DQQLTQSLQC
LNQAYQSVCE MPFAIPSETT MAIQSQPKIW GASLVEQLLA GKGDALPVSA YPADGVWPTN
TSQLEKRNLA EQLPVWETDL CTQCGYCVAI CPHSAIRARI VSETHPTLSE LKSLPYRSRQ
QPDAHYVLQV SPDDCTGCQL CTQVCPAKDR QEPERKALNM FEKNLSYQSE QQRFTHFQAL
PKQSAYQQQR IDVKTLQHVE PYFEYPNACA GCGETPYIRI LTQLFGDRLM IANATGCSSI
FGGNLPTTPY SQDSDGRGPA WANSLFEDNA EFGLGMNMAL EALQSRAQRL LGGYTPQSPL
PDLRSQIAEL KQRLPAHSEE QLLADYLSEK MVWMIGGDGW AYDIGFGGLD HVMRSGRNIN
ILVLDTQCYS NTGGQKSKST PQGQTAKLCS LPNPSPAKDL VKLYQDLPGA FVARIALGAN
INQTIKALQA AGEHSGPSLV VAYSPCIEHH YDLAHSAQVT KEVVKSGAWP LYAGVAQQD
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